PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00092.1_g00049.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 499aa    MW: 55931.9 Da    PI: 8.0335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00092.1_g00049.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-12281041598
                              -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               +v+p +f+ +h  g +  +s++l+l++  s r+Wev+l  ++++    +t+GWk+F + + +   D++ F++dg++ f  +v+ f
  Rsa1.0_00092.1_g00049.1  28 SVVIPDSFVLNHlkG-N-IQSTKLKLTSdASDRTWEVEL--DGQR----FTRGWKHFSDHHYILNDDVLSFRRDGDMVF--HVTPF 103
                              489*********844.3.48889999987899*******..8888....9**********************9999988..77766 PP

                              - CS
                       B3  98 r 98 
                               
  Rsa1.0_00092.1_g00049.1 104 G 104
                              5 PP
2B370.22.7e-22177268598
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               +++++l+++ ++lp kfa+++g+++++  ++ l++e+g+sW++ l+++k+ g+ + ++GW +F+k ng+k+  f+ Fkl++ +++
  Rsa1.0_00092.1_g00049.1 177 HVTPSNLSRNHMYLPSKFARSNGLNNRQ-CEIDLRNEHGKSWTLDLRHNKTTGQSFVRNGWTSFCKLNGIKAESFCRFKLVQ-NGT 260
                              57888899999***********999766.5**************************************************98.677 PP

                              ..EEEEE- CS
                       B3  91 elvvkvfr 98 
                              ++ ++++ 
  Rsa1.0_00092.1_g00049.1 261 KPALQLCP 268
                              78888886 PP
3B339.69.5e-13297386799
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefe 91 
                              +++++ksgrl++p +f +++g+k+ ++  +t+ +++g +W++ l++ k+s+ ++++ G ++   ang+k +gD+++++ ++  +++
  Rsa1.0_00092.1_g00049.1 297 KPYMFKSGRLRVPAPFGRANGIKEVGN--ITIVNKDGVEWKLHLCHMKGSELFYIR-GLRDCFVANGIKkVGDSFTLEAIR-GGAN 378
                              789******************999886..8888***********999999999999.***********99********987.8888 PP

                              .EEEEE-S CS
                       B3  92 lvvkvfrk 99 
                              + +k+ +k
  Rsa1.0_00092.1_g00049.1 379 PILKISSK 386
                              99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-143106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.13714106IPR003340B3 DNA binding domain
SMARTSM010199.7E-916106IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-1227106IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-72898IPR003340B3 DNA binding domain
CDDcd100173.82E-930103No hitNo description
Gene3DG3DSA:2.40.330.107.1E-23166269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-21169269IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-28173270IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719173270IPR003340B3 DNA binding domain
CDDcd100171.08E-19173268No hitNo description
PfamPF023622.1E-21176268IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-7287383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-8289380IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-15291387IPR003340B3 DNA binding domain
PROSITE profilePS508638.995291387IPR003340B3 DNA binding domain
PfamPF023624.1E-12296386IPR003340B3 DNA binding domain
CDDcd100177.45E-10296383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASSTKKPIF IIDLSGQKSN PVPSLSISVV IPDSFVLNHL KGNIQSTKLK LTSDASDRTW  60
EVELDGQRFT RGWKHFSDHH YILNDDVLSF RRDGDMVFHV TPFGRSFSQQ IQFISSTSEA  120
ENDGSDDDDE HNIFDDDVYD DDDATSEEKL YPNKTSLKKR ARTETESSSE NTYLVAHVTP  180
SNLSRNHMYL PSKFARSNGL NNRQCEIDLR NEHGKSWTLD LRHNKTTGQS FVRNGWTSFC  240
KLNGIKAESF CRFKLVQNGT KPALQLCPNT EVGEIESEDC SDPASMNQNR TVALQLKPYM  300
FKSGRLRVPA PFGRANGIKE VGNITIVNKD GVEWKLHLCH MKGSELFYIR GLRDCFVANG  360
IKKVGDSFTL EAIRGGANPI LKISSKEASF DGSKTPQPRM IQVSRAEEEK ETGVQKKARV  420
SAEGEPSHRT RASKRSSAAP KTLQGKQPLQ PCSISDQVTK VKQSVVDALT DVRQFRSELE  480
IKERNLEAAL LEIDVLGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162LKKRART
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00092.1_g00049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479054.10.0PREDICTED: putative B3 domain-containing protein REM4
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A0D3DH830.0A0A0D3DH83_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELW00.0A0A3P6ELW0_BRAOL; Uncharacterized protein
STRINGBo7g115310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]