PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00089.1_g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 512aa MW: 57458.3 Da PI: 5.1849 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.1 | 6.2e-26 | 188 | 242 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv+av+q+G +kA Pk+il+lm+++ Lt+e+v+SHLQkYRl Rsa1.0_00089.1_g00031.1 188 KARVVWSYELHQKFVNAVNQIGCDHKAGPKKILDLMNIPWLTRENVASHLQKYRL 242 68****************************************************8 PP | |||||||
2 | Response_reg | 78.9 | 1.7e-26 | 12 | 118 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 vl+vdD+p+ ++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + Rsa1.0_00089.1_g00031.1 12 VLVVDDDPTWIKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETS 95 89*********************.***************999999**********************5543.7************* PP HHHHHHHTTESEEEESS--HHHH CS Response_reg 85 dalealkaGakdflsKpfdpeel 107 + + ++ Ga d+l Kp+ ++el Rsa1.0_00089.1_g00031.1 96 RVMKGVQHGACDYLLKPIRMKEL 118 ******************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.13E-35 | 9 | 131 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.3E-43 | 9 | 133 | No hit | No description |
SMART | SM00448 | 3.2E-31 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.365 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.1E-24 | 12 | 119 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.88E-31 | 13 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 185 | 247 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-16 | 186 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-22 | 188 | 242 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 190 | 241 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MEKGFSPVGL RVLVVDDDPT WIKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGFDIVI 60 SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI 120 IWQHVLRKKL QEVRDKEGCC YDGGADWFTQ AHFLGGGEDV SFGKKRKDFD FEKKLLQDES 180 DSSSSSKKAR VVWSYELHQK FVNAVNQIGC DHKAGPKKIL DLMNIPWLTR ENVASHLQKY 240 RLYLSRLEKG KEIKCYSGGV KNMDSPPKDA EINSGHQSPP GKSSYAFLKA TETDQKQLAS 300 SSVSDPTSDV HMPPKAKKTR IGFDPPISSG VFGSLLPWND VPDPVESKPP ILYESSFLQQ 360 QQQPLASQSS YAANSAPSLL QEEMKPSYEN TAAGGTCEIL MPQDLDLSAP LSAVPCVKLQ 420 EFSPNATSKN TELNWELPEA HHSGSLDTDL ELSWLQEEHF FANTGLQNFQ FQDYTCNPSL 480 LSELPPNLWY GNDRLPDPDE YTLMVDQGLF IS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 184 | 247 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00089.1_g00031.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB041532 | 0.0 | AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018445766.1 | 0.0 | PREDICTED: two-component response regulator ARR11-like | ||||
Swissprot | Q9FXD6 | 0.0 | ARR11_ARATH; Two-component response regulator ARR11 | ||||
TrEMBL | A0A078GUQ6 | 0.0 | A0A078GUQ6_BRANA; Two-component response regulator | ||||
STRING | Bra004076.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8066 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 0.0 | response regulator 11 |
Publications ? help Back to Top | |||
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