PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00079.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 284aa    MW: 32415.7 Da    PI: 6.9356
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00079.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.3e-131560650
                             HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
                   SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                             + ++ + f  R +++lKKA+ELS LC+++ +vi +  +g+l  +++
  Rsa1.0_00079.1_g00026.1 15 SVRKDTFFKARAKTVLKKAYELSELCGVDLCVICYDREGNLvNTWP 60
                             6677788888**************************9998725676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0014461IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.447855IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-131498IPR002100Transcription factor, MADS-box
CDDcd002664.96E-161588No hitNo description
PfamPF003193.5E-101755IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTTTTTRKIC RSKLSVRKDT FFKARAKTVL KKAYELSELC GVDLCVICYD REGNLVNTWP  60
ENDEARVKAT AERFSRLSEK ERNKKSTNLS RFLNKKMMDE KKASLKANDN KFSKKVFIFE  120
DSLRSRLGLF QEKITELVDD LGSDDPSLIN ADQCQPILMN HLSTTESPAD LPTSSLNHPS  180
NFSILLYNHD NGTFTQLANS SALPPSFEQP VIPCNQDYGT NYLDLLLGEQ DNKFDLPIAP  240
HPMMHTQTSM FHQQFDHQFM QTQEGMIPYN HTQSSSGYPT MMFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00079.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443457.10.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A397YPC54e-76A0A397YPC5_BRACM; Uncharacterized protein
TrEMBLA0A3P6BZS04e-76A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBLM4CIN74e-76M4CIN7_BRARP; Uncharacterized protein
STRINGBra004071.1-P7e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.11e-41AGAMOUS-like 93