PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00074.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YC
Protein Properties Length: 218aa    MW: 24674.4 Da    PI: 6.9931
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00074.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC116.99.7e-3756153298
                    NF-YC   2 lksfwekqiekatdfk..nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                              lk+fw +q ++ +     n  lPl+++kkilk+d++v+ is +aP+l+skace++il+ltlr+w+h+++++r+t++++d++ av++
  Rsa1.0_00074.1_g00007.1  56 LKVFWDNQWDQLQYSTgfNCCLPLSKVKKILKSDPKVR-ISRDAPALFSKACEYLILDLTLRAWMHTQSCTRQTIQHCDVFHAVKN 140
                              89******8887655545999****************7.9********************************************** PP

                    NF-YC  86 tdifdflvdivpr 98 
                              ++++ fl+d vp 
  Rsa1.0_00074.1_g00007.1 141 SETHYFLIDLVPF 153
                              ***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.8E-2166153IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.1E-2377152IPR009072Histone-fold
PfamPF008083.5E-1377138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKRSIVASSS QLPNASVKAS RIRMEPVAPY SHSMMEIPYH TSTSNTEALS SLDAVLKVFW  60
DNQWDQLQYS TGFNCCLPLS KVKKILKSDP KVRISRDAPA LFSKACEYLI LDLTLRAWMH  120
TQSCTRQTIQ HCDVFHAVKN SETHYFLIDL VPFGPYCAIH QDVLEHAEPE TVLPPVKMIL  180
PDMNVAIDMD QIEQETLIAK PSSNHKNFDL NSISRAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-2263152394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00074.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482400.11e-143PREDICTED: nuclear transcription factor Y subunit C-10
SwissprotQ58CM84e-73NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLV4LXI01e-105V4LXI0_EUTSA; Uncharacterized protein
STRINGXP_006405799.11e-106(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.12e-75nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]