PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00074.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 218aa MW: 24674.4 Da PI: 6.9931 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 116.9 | 9.7e-37 | 56 | 153 | 2 | 98 |
NF-YC 2 lksfwekqiekatdfk..nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 lk+fw +q ++ + n lPl+++kkilk+d++v+ is +aP+l+skace++il+ltlr+w+h+++++r+t++++d++ av++ Rsa1.0_00074.1_g00007.1 56 LKVFWDNQWDQLQYSTgfNCCLPLSKVKKILKSDPKVR-ISRDAPALFSKACEYLILDLTLRAWMHTQSCTRQTIQHCDVFHAVKN 140 89******8887655545999****************7.9********************************************** PP NF-YC 86 tdifdflvdivpr 98 ++++ fl+d vp Rsa1.0_00074.1_g00007.1 141 SETHYFLIDLVPF 153 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.8E-21 | 66 | 153 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.1E-23 | 77 | 152 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-13 | 77 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKRSIVASSS QLPNASVKAS RIRMEPVAPY SHSMMEIPYH TSTSNTEALS SLDAVLKVFW 60 DNQWDQLQYS TGFNCCLPLS KVKKILKSDP KVRISRDAPA LFSKACEYLI LDLTLRAWMH 120 TQSCTRQTIQ HCDVFHAVKN SETHYFLIDL VPFGPYCAIH QDVLEHAEPE TVLPPVKMIL 180 PDMNVAIDMD QIEQETLIAK PSSNHKNFDL NSISRAVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-22 | 63 | 152 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00074.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482400.1 | 1e-143 | PREDICTED: nuclear transcription factor Y subunit C-10 | ||||
Swissprot | Q58CM8 | 4e-73 | NFYCA_ARATH; Nuclear transcription factor Y subunit C-10 | ||||
TrEMBL | V4LXI0 | 1e-105 | V4LXI0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405799.1 | 1e-106 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16422 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 2e-75 | nuclear factor Y, subunit C12 |
Publications ? help Back to Top | |||
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