PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00073.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 339aa    MW: 39140.5 Da    PI: 9.7584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00073.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.3e-21655251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +++++s + +++ +R+++i KKA+ELS+LC + v+vi+++++g+l+++++
  Rsa1.0_00073.1_g00025.1  6 SSSSNSLAATSLNNRLKTIYKKASELSILCRVAVSVIYYGPNGELKTWPK 55
                             789999******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-131584IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8251557IPR002100Transcription factor, MADS-box
PfamPF003191.0E-111553IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRASSSSSSN SLAATSLNNR LKTIYKKASE LSILCRVAVS VIYYGPNGEL KTWPKEKEVV  60
KDMALKYKAA TKRKNSYNLR DFLEGKLDND KNLKDNKKKK KKTKREFENV KYPEWYPALD  120
HYSPDQLRQL ILSLQGTLSS MEERIRVLQV QKQKSTNLVH QNLTKHRHDH YQTVQPLNSS  180
QCSLYLYNHD DATLSELPLS AAHSNQLINY QNYLRMQQQK HYDPCVANTQ DHPALLSVQE  240
SRLKNQFMKQ QERNMCMMNN TSNSNVLLHP CPLNTIPKEL SFDLQKNPKD DMVGRHKFSQ  300
DFPNLFLAYA DSPQLQTSLP SIHQTIPNIN LIPDNSSCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104KKKKKKTKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00073.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435558.10.0PREDICTED: agamous-like MADS-box protein AGL75
TrEMBLA0A3P6DKJ40.0A0A3P6DKJ4_BRAOL; Uncharacterized protein
STRINGBo00615s090.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.11e-82AGAMOUS-like 78