PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00070.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 643aa    MW: 71852.6 Da    PI: 7.1995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00070.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.2e-08230253226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              k ++C+ffa+ G+C++Gd C F+H 
  Rsa1.0_00070.1_g00026.1 230 KSARCKFFAE-GFCPFGDECWFSHH 253
                              6789******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.9E-6227254IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5228254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-6228253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418229255IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-6230253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.90.70.101.2E-9384583No hitNo description
SuperFamilySSF540011.31E-10386584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MVVSLKLKEA EDTGQYSLPL VYFPSLQFAG EPNDLVSIFH HPRLVEAEVT EKNSLLLTRN  60
FLTGNKSHGG TFKSTADITL NQLRSSTFKM VPTLGELMNT LDKMPDEPQD YKPPFFWGCL  120
ENEAQYLLAK NPLRVEVGNV NSKRLVLTLK ISHSQGNYLE LTDVFSNFPL LSLAISEDIM  180
DQLETDVVIS ETGKDTYVKN RDKGKSVLEP CENENDFMQD DGKRTRPVTK SARCKFFAEG  240
FCPFGDECWF SHHVGGDGNS CCIFSCEASG SDSKGKSVLE PCENENYLHT LEVKKESEAV  300
VGDDDTSREF VLGRCCWDTS VSKVFRKPAL SLAGVKPPKK KKVTVKEKSP NWRAGVTRVD  360
RQWITLSEED KNKVGPICAE QENQKLGAVG DQGMHQLCYA YVGVNLVSSL RVIDGVDVKF  420
VNLSVRELCF YASPKDRLMQ TSTEHKCHPL QVSAGLDYIK RHGVSVQRGP KEDLFDCIKD  480
KPNKDGKDKI KIAGRRYLGN DLYASLKRLK KQPLGATVVL FSDYWDTADG EVYRGPKSDK  540
SQYDGLHGVT VADAFLMDGE LVFWCKSSHG EEYHTKGYIL VSGEMIVMAH HFAAGSGNST  600
FGVNRGLRGG DTPLPLSSPT PLIHDFVYPF LESEKRKSNK RKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00070.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487439.11e-154PREDICTED: uncharacterized protein LOC108857929
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2170323