PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00070.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 131aa    MW: 14058.3 Da    PI: 5.1192
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00070.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.4e-173773135
                     GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C++Cg+++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Rsa1.0_00070.1_g00011.1 37 CTHCGVSStcTPMMRRGPSGPRTLCNACGLFWAARGT 73
                             ********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.56E-133085No hitNo description
PROSITE profilePS5011411.6753192IPR000679Zinc finger, GATA-type
SMARTSM004017.7E-183184IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-163578IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-163687No hitNo description
PfamPF003202.3E-143773IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403764IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MQRNKGQFSS GKMTDGAYNS GTDQDSAQDD GRPDISCTHC GVSSTCTPMM RRGPSGPRTL  60
CNACGLFWAA RGTLRDLSKK TEENQMAIIK SGELGSDAGD NNSNYQPATV EEHSAFFSLA  120
NEDNSNMLGN H
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00070.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895483e-35AC189548.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478829.11e-90PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH64e-68GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A078JAP61e-71A0A078JAP6_BRANA; BnaA01g35150D protein
TrEMBLA0A398AP051e-71A0A398AP05_BRACM; Uncharacterized protein
TrEMBLM4DBE54e-72M4DBE5_BRARP; Uncharacterized protein
STRINGBra013805.1-P7e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-70GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]