PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00064.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 925aa    MW: 102487 Da    PI: 6.0508
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00064.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.31.8e-42148225178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cqve+Ceadls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Rsa1.0_00064.1_g00036.1 148 VCQVENCEADLSKVKDYHRRHKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 225
                              6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-34142210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.582146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-39148227IPR004333Transcription factor, SBP-box
PfamPF031105.3E-31149222IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.48E-8716815IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-8717821IPR020683Ankyrin repeat-containing domain
CDDcd002041.91E-9718815No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MEARIEGEGQ HFYGYRAMDV RSVGKRSVEW DLNDWKWDGD LFVATPLNPG ASRQFFPLGN  60
SSNSSSTCSE EGNNNNSREV EKKRRAPASA ATATGDDDDN TNNNGGGGLT LKIGENGYDL  120
NGEREGNSAA AKKTKFGGGG GGVANRSVCQ VENCEADLSK VKDYHRRHKV CEMHSKATSA  180
LVGGIMQRFC QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR RKTNPEPGAN GNPLSDDHQS  240
SNLLLITLLK ILSNMHSNGS DHPGDQDLMP HLLKSLVSHA GEQLGKNLVE LLLQGGGSQA  300
SGLLAVEQAP QEDLKQAPQL PRQELYANGT ATGNRSEKQA RVNDFDLNDI YIDSDDGTDI  360
ERSSPPPTNP ATSSPDYPSW IHQTSPPQTT RNSDSASDQS PSSSSEDAQM RTGRIVFKLF  420
GKEPNDFPVV LRGQILDWLS HTPTDIESYI RPGCIVLTIY LRQAETAWDE LSDDMGFSLS  480
KLLDLSDDPL WTTGWIYVRV QNQYAFVFDG QVAVDTSLPL RSRDYSHITS VRPLAVAATG  540
KAQFTVKGIN LRRPGTRLLC AVEGKYLIQE TTKEDDDLKE SNEIVECVSF SCDLPITSGR  600
GFMEIEDQGL SSSFFPFIVV EEDDVCSEIR VLETTLEFTG TDSAKQAMEF IHELGWLLQR  660
SKLGVFPLTR FKWLIEFSMD REWCAVIRKL LNMFFEGAVG DYSSSSPSDA ALSELCLLHR  720
AVRKNSKPMV EMLLRYSPKQ QRIYSLFRPD AAGPAGLTPL HIAAGKDGSE DVLDALTEDP  780
AMVGVGAWRT SRDSTGFTPE DYARLRGHFS YIHLIQRKIN KKSATEDHVV VNIPASISDR  840
EQKETKPGSS ALEITHGNHK LQCKLCDHKL VYGTGRRSVA YRPAMLSMVA IAAVCVCVAL  900
LFKSCPEVLY VFQPFRWELL DYGTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32139222184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00064.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439364.10.0PREDICTED: squamosa promoter-binding-like protein 1
RefseqXP_018439365.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A1J3IQZ60.0A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRINGXP_006397898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]