PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00056.1_g00041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 27658.4 Da PI: 7.5837 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.4 | 2.8e-37 | 40 | 100 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+r k+s+ Rsa1.0_00056.1_g00041.1 40 HHQSLKCPRCNSLNTKFCYYNNYNHSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRTAKRSK 100 57899***************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-33 | 31 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MQDIHDYSMT GSGGGGGGST VRFLGGDRRM RVHQNNILNH HQSLKCPRCN SLNTKFCYYN 60 NYNHSQPRHF CKSCRRYWTK GGVLRNVPVG GGCRTAKRSK SKQPPSSSLS TADKPTTAQD 120 GEEKPSSSET SSLTASTSTA VTAKVTSDMY NLKLYGNGIE WSTLLGQGSS DGMGGFIETT 180 PFEFGGNTVH QQLEDRTALV DPSMGFEPLD WGSGGGDQTL FDLTSTVDNA HWSHQDQHDF 240 YLPQFSDRFS SF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00056.1_g00041.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353138 | 1e-85 | AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454582.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Swissprot | Q8LDR0 | 6e-99 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A3P6DZ95 | 1e-119 | A0A3P6DZ95_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g014360.1 | 1e-120 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 7e-92 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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