PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00055.1_g00053.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 286aa MW: 31494.6 Da PI: 10.2187

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00055.1_g00053.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	92.1	7.2e-29	136	195	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++k ++k rkpy+h+SRh hAlrRpRgsgGrF Rsa1.0_00055.1_g00053.1 136 GTIYVNSKQYHGIIRRRQSRAKAAAildQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195 689*******************9999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-28	133	198	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.67	134	198	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.5E-21	137	159	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-23	137	195	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.5E-21	172	195	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDSDSFA GAKVRSAGGI EQGVNKQSNS 60 ASHFAFSLGE VKSSRVVPKP QGSAFSMQPP YLELGFSQPQ IYTKYPCVEQ QYYGVLSAYG 120 PHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA ILDQNKPSSK FRKPYMHHSR 180 HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTMPQPQPQ RSNSQDSDVL HPESMTMNLS 240 NRLGSEVTSM NYFLGSSLHP LGGMVMPSKW ITATAAMDNG CCNFKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	9e-15	138	196	5	60	HAPB protein
4g92_A	9e-15	138	196	5	60	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00055.1_g00053.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013735933.1	0.0	nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	1e-164	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A398A7L7	0.0	A0A398A7L7_BRACM; Uncharacterized protein
STRING	Bo3g060160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-167	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]