PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00055.1_g00053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 286aa MW: 31494.6 Da PI: 10.2187 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 92.1 | 7.2e-29 | 136 | 195 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++k ++k rkpy+h+SRh hAlrRpRgsgGrF Rsa1.0_00055.1_g00053.1 136 GTIYVNSKQYHGIIRRRQSRAKAAAildQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195 689*********************9999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-28 | 133 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.67 | 134 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.5E-21 | 137 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.4E-23 | 137 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.5E-21 | 172 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDSDSFA GAKVRSAGGI EQGVNKQSNS 60 ASHFAFSLGE VKSSRVVPKP QGSAFSMQPP YLELGFSQPQ IYTKYPCVEQ QYYGVLSAYG 120 PHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA ILDQNKPSSK FRKPYMHHSR 180 HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTMPQPQPQ RSNSQDSDVL HPESMTMNLS 240 NRLGSEVTSM NYFLGSSLHP LGGMVMPSKW ITATAAMDNG CCNFKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 9e-15 | 138 | 196 | 5 | 60 | HAPB protein |
4g92_A | 9e-15 | 138 | 196 | 5 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00055.1_g00053.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013735933.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
Swissprot | Q9M9X4 | 1e-164 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A398A7L7 | 0.0 | A0A398A7L7_BRACM; Uncharacterized protein | ||||
STRING | Bo3g060160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-167 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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