PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00052.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 398aa MW: 46010.2 Da PI: 4.8727 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.5 | 1.2e-34 | 58 | 150 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y+++ed+++++++sws+ +nsf+v+d+++f+ ++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Rsa1.0_00052.1_g00007.1 58 FLTKTYDLVEDSRTNHVVSWSQANNSFIVWDPQSFSMTLLPIFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFL 134 9****************************************************************999.........********* PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkkse 103 +gkk+ll++i+r+k++ Rsa1.0_00052.1_g00007.1 135 RGKKHLLKTIRRRKTS 150 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.71E-34 | 53 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.6E-37 | 54 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.4E-57 | 54 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.3E-30 | 58 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-18 | 58 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-18 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 97 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-18 | 109 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MDPSHNFIKE DFPTGFNDSP LPPSSYLYST SIAPNDPTAT LSSPQPIEGL HESGPPPFLT 60 KTYDLVEDSR TNHVVSWSQA NNSFIVWDPQ SFSMTLLPIF FKHNNFSSFV RQLNTYGFRK 120 VNPDRWEFAN EGFLRGKKHL LKTIRRRKTS NNNQMQLPQS SSQQQSLDNC CIEVGKYGLD 180 GEMDSLRRDK QVLMMELVKV RQEQQSTKMH LTLLEDKLKK TESKQKQMMS FLARAMQNPD 240 FLQQLIEQKE KRKDTEEAID KKRQRPIDQG KRHLVCVEDY DDGGGGYGRY EKDAGSSSVF 300 FDMKQETYGD MSELDRLAMH IQGLGDQSNK EEVVLDVRKG NEEEQHKERY HEENNEIYGE 360 GFWEDLLNEG QKFDLEGDDE ENVDVLIEQL GYLGSSPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-23 | 53 | 150 | 12 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00052.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045974 | 0.0 | AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. | |||
GenBank | AY079374 | 0.0 | AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437641.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 0.0 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | M4E4U6 | 0.0 | M4E4U6_BRARP; Uncharacterized protein | ||||
STRING | Bra023800.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 0.0 | heat shock transcription factor A6B |