PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00051.1_g00036.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CPP

Protein Properties

Length: 925aa MW: 103567 Da PI: 7.37

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00051.1_g00036.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	41.9	2e-13	136	174	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk s+Clk+YCeCfa+g++C+ C+C +C N+ e Rsa1.0_00051.1_g00036.1 136 KQKHCNCKASRCLKLYCECFASGSYCNG-CNCLKCLNNLE 174 79************************.******976 PP
2	TCR	50	5.9e-16	221	260	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC++a++ Cse+C+C dCkN e Rsa1.0_00051.1_g00036.1 221 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCRDCKNFE 260 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.3E-14	135	175	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.248	136	261	IPR005172	CRC domain
Pfam	PF03638	4.5E-10	137	172	IPR005172	CRC domain
SMART	SM01114	3.0E-19	221	262	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.1E-12	224	259	IPR005172	CRC domain
Gene3D	G3DSA:3.40.50.1820	1.5E-39	654	800	IPR029058	Alpha/Beta hydrolase fold
SuperFamily	SSF53474	8.11E-35	659	919	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF12697	1.9E-8	666	904	IPR000073	Alpha/beta hydrolase fold-1
Gene3D	G3DSA:3.40.50.1820	1.5E-39	833	918	IPR029058	Alpha/Beta hydrolase fold

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence Send to blast
MENTDQDLGS HRNQLARRLD FSVSAATEME MDSSQGSEKT HSILESNSNQ REGDFPPPPP 60 PSGSEDQRVK SPKPSPRSPV RSSATELSTP PQKPPPLHGF DHNPAKYRVS GKEETLTPGG 120 MQREAESKDV TTTPSKQKHC NCKASRCLKL YCECFASGSY CNGCNCLKCL NNLENETARQ 180 EAITGTLERN PDAFKPKIAG SPLGTKDLQE DVRHQLLILG KHSKGCHCKK SGCLKKYCEC 240 YQANVLCSEN CRCRDCKNFE GSQERNTLLH GPETYTQQTT NAALNRAVAT SGYLNPLESR 300 KRKSKEASHS VAARGSSAGP HLIRNGDTTL FSVPNNRAVL GPTTCTYRSS LSNTIQPRHV 360 KDLCALLVTR SVDLANKRRK NEEDPTLDPA LRDDGNETND SPDCVLDSDS VDEKPMSPAT 420 RALMCDDEHV IISEKETSAA RVKTSQEKED AYTSSESYLE QERRILSSFR DYLIQFVNRG 480 NIKGMDIKTK TNPSRKEPPE DEEQRHINSG LGQQETHKHS EQNKKSFKRE LQPSSIKKQV 540 AQTTKKHRSK TQDGIFFSPM TRAMETPTNE SVDFRSEFLR VLRSRRSPEV PLVAECSKPV 600 EDPVFQNVVP STDALESCPK ENINNLKEML KEENLHLHTE AAEQGRLPLL ILSLKEKKSE 660 ERRPAIVFMH GTNTNKEWLR PWLEAYASRG YVAIGLDSRY HGERADSKTA YIDALISSWK 720 NGDTMPFIFD TVWDLIKLAE YLTQREDIDP KRIGITGISL GGMHAWFAAA ADTRYSVTVP 780 LIGVQGFRWA IENDEWEARV NSIKPLFEEA RIDMGKSEID KEVVENVWNR ISPGLASLFD 840 SPYSLPVTAP RPLYILNGGK DPRCPLGGLV VPLERALKAY VETASPGNFK FVAEDGVGHE 900 VTSFMIKESS DWFDKFLKHR NITSC

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence Send to blast

MENTDQDLGS HRNQLARRLD FSVSAATEME MDSSQGSEKT HSILESNSNQ REGDFPPPPP  60
PSGSEDQRVK SPKPSPRSPV RSSATELSTP PQKPPPLHGF DHNPAKYRVS GKEETLTPGG  120
MQREAESKDV TTTPSKQKHC NCKASRCLKL YCECFASGSY CNGCNCLKCL NNLENETARQ  180
EAITGTLERN PDAFKPKIAG SPLGTKDLQE DVRHQLLILG KHSKGCHCKK SGCLKKYCEC  240
YQANVLCSEN CRCRDCKNFE GSQERNTLLH GPETYTQQTT NAALNRAVAT SGYLNPLESR  300
KRKSKEASHS VAARGSSAGP HLIRNGDTTL FSVPNNRAVL GPTTCTYRSS LSNTIQPRHV  360
KDLCALLVTR SVDLANKRRK NEEDPTLDPA LRDDGNETND SPDCVLDSDS VDEKPMSPAT  420
RALMCDDEHV IISEKETSAA RVKTSQEKED AYTSSESYLE QERRILSSFR DYLIQFVNRG  480
NIKGMDIKTK TNPSRKEPPE DEEQRHINSG LGQQETHKHS EQNKKSFKRE LQPSSIKKQV  540
AQTTKKHRSK TQDGIFFSPM TRAMETPTNE SVDFRSEFLR VLRSRRSPEV PLVAECSKPV  600
EDPVFQNVVP STDALESCPK ENINNLKEML KEENLHLHTE AAEQGRLPLL ILSLKEKKSE  660
ERRPAIVFMH GTNTNKEWLR PWLEAYASRG YVAIGLDSRY HGERADSKTA YIDALISSWK  720
NGDTMPFIFD TVWDLIKLAE YLTQREDIDP KRIGITGISL GGMHAWFAAA ADTRYSVTVP  780
LIGVQGFRWA IENDEWEARV NSIKPLFEEA RIDMGKSEID KEVVENVWNR ISPGLASLFD  840
SPYSLPVTAP RPLYILNGGK DPRCPLGGLV VPLERALKAY VETASPGNFK FVAEDGVGHE  900
VTSFMIKESS DWFDKFLKHR NITSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-32	137	270	11	132	Protein lin-54 homolog
5fd3_B	4e-32	137	270	11	132	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	303	SRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00051.1_g00036.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456150.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 7
Refseq	XP_018456153.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 7
TrEMBL	A0A3P6DP32	0.0	A0A3P6DP32_BRAOL; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25790.1	1e-171	Tesmin/TSO1-like CXC domain-containing protein