PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00050.1_g00039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | CO-like | ||||||||
Protein Properties | Length: 414aa MW: 46403.8 Da PI: 5.0437 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.3 | 3.7e-09 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C + H+ H++v Rsa1.0_00050.1_g00039.1 13 ARACDSCVKKRARWYCAADDAFLCQSCDTLVHSAnplarrHERV 56 578*****************************657888888876 PP | |||||||
2 | CCT | 68.1 | 2.4e-23 | 356 | 399 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Rsa1.0_00050.1_g00039.1 356 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 399 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.9E-10 | 11 | 58 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.879 | 11 | 58 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-8 | 13 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.50E-9 | 14 | 58 | No hit | No description |
Pfam | PF06203 | 6.8E-18 | 356 | 398 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 356 | 398 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MKSVANAVGA KTARACDSCV KKRARWYCAA DDAFLCQSCD TLVHSANPLA RRHERVRLKS 60 ASPAVSKYTN HNHSPSSPPH EAATWHQGFT RKPRTPRGSG KKNNLSIFHD LVPEISAEDQ 120 TDSYEIEEQL ICQVPVLDPM VAEQFLNDVV EPKIEFPLMR IDDQENEDNA ESCLNGFFPT 180 DMELEEFAAD VETLLGHGLD VTESYAMEGL GLSNTEMFKI EKDEIEEDEG EETKAMNMGI 240 GCGEDRDDGD GTVAFELRFD HESHNTYEEE AIKNVECIKV KEEEQKNVLM LSLNYDSVIS 300 TWGGQGPPWT SGEPPERDID ISDKPVVSME INGGESHHKH YVGGCLPSTG FGDGGREARV 360 SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRAS LALSAANSPL GVNY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 366 | 382 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00050.1_g00039.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018466779.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
Swissprot | Q8RWD0 | 0.0 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A3P5YLY7 | 0.0 | A0A3P5YLY7_BRACM; Uncharacterized protein | ||||
STRING | Bo5g043240.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2467 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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