PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00050.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 287aa    MW: 33265.4 Da    PI: 6.9237
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00050.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-142067148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd +l ++++  G g+W+  a+  g++R +k+c++rw++yl
  Rsa1.0_00050.1_g00030.1 20 KGPWTLEEDTILTNYIAHNGEGRWNVLAKSSGLKRKGKSCRLRWLNYL 67
                             79******************************99************97 PP
2Myb_DNA-binding49.41.1e-1573116146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T++E++l+++++ q+G++ W++Ia++++ gRt++++k++w++
  Rsa1.0_00050.1_g00030.1  73 RGNLTPQEQLLILELHCQWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                              7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5081567IPR017930Myb domain
SuperFamilySSF466891.16E-2818114IPR009057Homeodomain-like
SMARTSM007174.3E-121969IPR001005SANT/Myb domain
PfamPF002499.1E-132067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-212174IPR009057Homeodomain-like
CDDcd001673.09E-82267No hitNo description
PROSITE profilePS5129423.77268122IPR017930Myb domain
SMARTSM007174.9E-1372120IPR001005SANT/Myb domain
PfamPF002492.7E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2275121IPR009057Homeodomain-like
CDDcd001671.06E-977116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTNRMKKRCI ENEEGVEQRK GPWTLEEDTI LTNYIAHNGE GRWNVLAKSS GLKRKGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHCQ WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QARQLNIDSS SHQFVEAVRS FWVPRLIHKM KDNSNTNTNT NTNTRTPPVD LLGPVSHDSS  180
FDNMGCSTSM SQELTKMSQF MDLSDLETTN SMSLKGSRGS INYQCVSEDY CSLPCPEEYM  240
VPTMGNSGIL HLKDCHVANS SYEEDVTQDP MWNMDDIWQF EEYAHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23201224105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-23201224105C-Myb DNA-Binding Domain
1msf_C1e-23201224105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157LKRKGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00050.1_g00030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490564.10.0PREDICTED: myb-related protein 305
SwissprotQ9C9G71e-102MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0D3CD880.0A0A0D3CD88_BRAOL; Uncharacterized protein
STRINGBo5g043390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-152myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]