PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00045.1_g00032.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 429aa    MW: 48068.2 Da    PI: 5.8532
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00045.1_g00032.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1049.3e-33247301155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+
  Rsa1.0_00045.1_g00032.1 247 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 301
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.832244304IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-30245303IPR009057Homeodomain-like
SuperFamilySSF466896.99E-17245301IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-23247301IPR006447Myb domain, plants
PfamPF002491.8E-10249300IPR001005SANT/Myb domain
PfamPF143793.7E-21335381IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAMANDFGYS TAMSSSFSAL HATVEDRYHK FPNSFWGSSG EELMNNHVPY QVVNSGGVYL  60
SGFCNVSAVS THGRTSQTQP PVSTMPSDRS SMQQPPVFTM PSDRSSMQDC QQSSSLINHH  120
PQEFLDPLDE LFDFSDHVSA PNPQAESSGV VKVVDLHEKS EWQNWADQLM SVDNGSEPNW  180
SELLGDPSPH NQNSQAQFHQ RSQQIPTPSP DVQRQEIIAN QQQQHQVVSL EEQLSARNSS  240
ASAATSKQRM RWTPELHEAF VEAVNQLGGS ERATPKAVLK LLKNPGLTIY HVKSHLQKYR  300
TARYKPETSE ATGEPQEKKI TSIEDIKSLD MKTSVEITQA LRLQMEVQKR LHEQLEIQRS  360
LQLQIEKQGR YLQMMFEKQQ QLQENNGSSS EPSPKQCNGT SAEVDFGLVA QAVNQTESAL  420
ASRKRARDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-28247305260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00045.1_g00032.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527940.0AK352794.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452851.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLM4F4W90.0M4F4W9_BRARP; Uncharacterized protein
STRINGBra036123.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]