PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00044.1_g00047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 40345.2 Da PI: 8.2202 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Rsa1.0_00044.1_g00047.1 14 KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.4e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia +++ gRt++++k++w++ Rsa1.0_00044.1_g00047.1 67 RGAFSQDEESLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.515 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.79E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.906 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.81E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT DNEIKNFWNS CLKKKLRRKG 120 IDPTTHKPII SELQTHNVID QKLTSLNTSE VVKSTASINN HDQSMVVLSQ TGPWWYPATT 180 TTGNQNAEFC FSSSSTQTVS DQIVSLISSM STSSSPTPMT SNFNPIPNNW ELNYCNNTVP 240 THSNSIYSAF FGNHYTEATQ IMNTNNNNNI LLDQLPHQDM KSWAPEILHY TDHNQSSETG 300 FEAEVKPDIA KYYWRSISSS PSPNERAATL LHDADVEFYG RSLQKPNIMA FDQKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00044.1_g00047.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099777 | 0.0 | AY099777.1 Arabidopsis thaliana transcription factor ATMYB4 (At5g26655) mRNA, complete cds. | |||
GenBank | AY519629 | 0.0 | AY519629.1 Arabidopsis thaliana MYB transcription factor (At5g26660) mRNA, complete cds. | |||
GenBank | BT008740 | 0.0 | BT008740.1 Arabidopsis thaliana At5g26655 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022570436.1 | 0.0 | transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 0.0 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3P6EW64 | 0.0 | A0A3P6EW64_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g095130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 0.0 | myb domain protein 86 |