PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00042.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32778.9 Da PI: 7.3832 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.5e-52 | 8 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+ +yL +kveg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rdkky++g+r+nratk+gyWk Rsa1.0_00042.1_g00003.1 8 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCPRDKKYPNGSRTNRATKAGYWK 92 79****************************.99**************96435556888**************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd+++++k +g+ +g +ktLvfy+grap g +t+W+mheyrl Rsa1.0_00042.1_g00003.1 93 ATGKDRKITCKsSGAITGYRKTLVFYEGRAPLGDRTSWFMHEYRL 137 *********99777889**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-60 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.991 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-29 | 9 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQMGSSCLPP GFRFHPTDEE LIGYYLSRKV EGLEIELEVI PVIDLYKFDP WELPDKSFLP 60 NRDMEWFFFC PRDKKYPNGS RTNRATKAGY WKATGKDRKI TCKSSGAITG YRKTLVFYEG 120 RAPLGDRTSW FMHEYRLCDD DISQKSPNFK GAFVLCRVVK KNGLKTKNLK NKNEQAIGSG 180 CSSLATSPCR DETTQFQPFK PSLTTNESSS IWISPDYILD SSKDYPQIQE GAAIYLPNYH 240 FPVNGANHQM GFPESSHLNI DQSVQTGYWP NYEYDQTGSF DYSNLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 8 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 8 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 8 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 8 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-51 | 8 | 162 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 8 | 162 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00042.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL021889 | 3e-83 | AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project). | |||
GenBank | AL161547 | 3e-83 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. | |||
GenBank | CP002687 | 3e-83 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018464553.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
Swissprot | O49697 | 1e-151 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
TrEMBL | A0A0D3DER5 | 0.0 | A0A0D3DER5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6QYB1 | 0.0 | A0A3N6QYB1_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6EJ92 | 0.0 | A0A3P6EJ92_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g105630.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2151 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-150 | NAC domain containing protein 71 |
Publications ? help Back to Top | |||
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