PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00041.1_g00039.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 273aa    MW: 28815 Da    PI: 7.6879
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00041.1_g00039.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.1e-40531541101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqq
  Rsa1.0_00041.1_g00039.1  53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQ 138
                              7***********************9989********************************************************** PP

                   DUF260  86 qleqlkaelallkeel 101
                              q+++l+ael++++++l
  Rsa1.0_00041.1_g00039.1 139 QVASLQAELSVVQSQL 154
                              ************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.21652154IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3953151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MADQQRSGHN SSDSRRKSAA GRRNSQHTTT SSLASSGGAM ATAATTGTGT VSPCGACKFL  60
RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA  120
RLSDPVYGCV STILALQQQV ASLQAELSVV QSQLINSRVA MANVMQQQQN HHQQQLVVMQ  180
QPEYSNNSSA STTLAGAAMN SFTATAEAAA AVSYDVMAPA NLEHSLQPVP RHQLGSGNQH  240
EDEEESGTDF SVAVGSTALA AEVIFPAEGF HRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-40431561113LOB family transfactor Ramosa2.1
5ly0_B3e-40431561113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00041.1_g00039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440564.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-147LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A291LR041e-163A0A291LR04_BRARR; Transcription factor LBD20
TrEMBLA0A398AU891e-163A0A398AU89_BRACM; Uncharacterized protein
TrEMBLM4F5T01e-163M4F5T0_BRARP; Uncharacterized protein
STRINGBra036436.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-106LOB domain-containing protein 20