PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00038.1_g00029.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 366aa MW: 41091.9 Da PI: 8.263

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00038.1_g00029.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.9	1.5e-30	212	267	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Rsa1.0_00038.1_g00029.1 212 KHRRCWSHELHRRFLNTLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 267 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.027	209	269	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-27	210	270	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.19E-17	210	270	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-26	212	267	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-5	214	265	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MIKSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISGA 60 TMENLYGQSE CSEQTTGECG GILDLFRPIR HSSTSLEEEE EVDVDDEHES NETSLNCNDK 120 SMKSEWLKSV QLWNQPDSVL SKKLERSQQE TDTVVEAIKG NDNGKTSHQP PCYETSNGKS 180 ADDKSQASIS GRQKKEAEKD SSGGNSGIGQ RKHRRCWSHE LHRRFLNTLK QLGGPHVATP 240 KQIRELMKVD GLTNDEVKSH LQKYRLHTRR SGQTIPNKRD SQTQHFVVVG GIWVPQASNS 300 TANAAAAGET ITGIYGPLPS EWPSQSSFGR TILEERSRCS NKGIIRCSSP AMSSSTRTKT 360 KDAKLS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MIKSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISGA  60
TMENLYGQSE CSEQTTGECG GILDLFRPIR HSSTSLEEEE EVDVDDEHES NETSLNCNDK  120
SMKSEWLKSV QLWNQPDSVL SKKLERSQQE TDTVVEAIKG NDNGKTSHQP PCYETSNGKS  180
ADDKSQASIS GRQKKEAEKD SSGGNSGIGQ RKHRRCWSHE LHRRFLNTLK QLGGPHVATP  240
KQIRELMKVD GLTNDEVKSH LQKYRLHTRR SGQTIPNKRD SQTQHFVVVG GIWVPQASNS  300
TANAAAAGET ITGIYGPLPS EWPSQSSFGR TILEERSRCS NKGIIRCSSP AMSSSTRTKT  360
KDAKLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00038.1_g00029.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467180.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9LS00	1e-162	HHO1_ARATH; Transcription factor HHO1
TrEMBL	A0A3P6EDY8	0.0	A0A3P6EDY8_BRAOL; Uncharacterized protein
STRING	Bra017349.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-157	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]