PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00038.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 416aa    MW: 47009 Da    PI: 7.6044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00038.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.87.7e-205194245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             + en+  rq tf+kR+ngilKKA+ELS+LCd++  +++fs+ gk
  Rsa1.0_00038.1_g00008.1 51 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPAGK 94
                             6799*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-2842101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.7314294IPR002100Transcription factor, MADS-box
CDDcd002664.77E-2443125No hitNo description
SuperFamilySSF554552.09E-2443134IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-174464IPR002100Transcription factor, MADS-box
PfamPF003196.9E-185295IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-176479IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-1779100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MQKLGVRRAA WRFVGLKFEL KYSIEDGSSP SYTSASLVMV RMGRVKLKIK KLENTNGRQA  60
TFAKRKNGIL KKANELSILC DIDLILLMFS PAGKASLCCG HRSSIEEVIA KFSQVTPEER  120
TKKKVESLET LKKTFLKLDH NVNIRELIAS SNSTTEDLST QASVLQARIS EIHGRLSYWT  180
ELDKINNVDH LGQLEISIRQ SLDQLRAHKE HLGQQQQQQQ AMQIENANFV KDWSICSLQD  240
GIEIPLEQQL QSMSWILNSN NTTNIVTEEH NPIPQREVEC SASSSFGSYP GFLDELTTTT  300
NGDIKPQINM QQPFTNNNMI SYNPNIQNDV KPHHQTYPPP PLPHPPVFNF PMNQRDYHMN  360
GFFEAPPPPP GTSAYNNNNN NNNNNSQARF GSSSSSLPCS ISMLDEYLFS QMQQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-1242133190MEF2 CHIMERA
6byy_B1e-1242133190MEF2 CHIMERA
6byy_C1e-1242133190MEF2 CHIMERA
6byy_D1e-1242133190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00038.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455441.10.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLM4DLM30.0M4DLM3_BRARP; Uncharacterized protein
STRINGBra017404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-174AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]