PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00037.1_g00043.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 342aa    MW: 38763.9 Da    PI: 7.309
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00037.1_g00043.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.3e-31205259256
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              +r+rW++eLH++Fv+a+++LGG+++AtPk+i+e+m v+gLt+++vkSHLQkYR++
  Rsa1.0_00037.1_g00043.1 205 QRRRWSQELHRKFVDALHSLGGPQVATPKQIREMMRVDGLTNDEVKSHLQKYRMH 259
                              8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.054202261IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-27202262IPR009057Homeodomain-like
SuperFamilySSF466894.17E-17202262IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24205259IPR006447Myb domain, plants
PfamPF002495.1E-8206257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVQTDTDKMG LNLNLSMYSL AKPLSQFLDQ VSRIKDDDSK LSEIDGYVGK LEEERRKIDV  60
FKRELPLCML LLNEAIERLK EEASSVMMMA SNCKLDVGEG VRLESDNKKN WMSSAQLWIS  120
NPNSQLQSTN EEGDGCVTQN PVQTCNNQGG AFPPPYNPPP PPPPAPLTLR TPTSEILMDY  180
RRIEQNHPQF SKPIIQSHHV PKKDQRRRWS QELHRKFVDA LHSLGGPQVA TPKQIREMMR  240
VDGLTNDEVK SHLQKYRMHI RKHPLHPAKT LPSSDQAVLL DRETQSLISL TRSDSPQSPL  300
VVDRGCLFSN NGHSSEDEEK SDGRSSWKSV SNKNRPALDL EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-14206257354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14206257354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14206257354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14206257354Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-14206257455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PKKDQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00037.1_g00043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453470.10.0PREDICTED: myb family transcription factor EFM
RefseqXP_018453831.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB01e-159HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A0D3A1F20.0A0A0D3A1F2_BRAOL; Uncharacterized protein
STRINGBo1g005280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-165G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]