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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00032.1_g00025.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
GRAS |
| Protein Properties |
Length: 513aa MW: 57513.8 Da PI: 4.8473 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00032.1_g00025.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 248.5 | 2.7e-76 | 148 | 513 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...f 84
++lL cA a+++++ +++q++++ lselas++gd+++Rla++ + AL+++++ s + ++ ++ + + s+e+ +++k+ f
Rsa1.0_00032.1_g00025.1 148 EQLLNPCALAITARNSSRVQHYICVLSELASSSGDANHRLASFGLSALKKHIST--SFVPSSPSSVTFA---SAEVKMFQKTllkF 228
689**************************************************9..3333333333333...4455555555667* PP
GRAS 85 sevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleet 161
+evsP++ + + +aN+aIl+ +++e + +Hi+D+++s+G+QWp+Ll+aL +Rpegpp ++RiT+v++ +++ ++
Rsa1.0_00032.1_g00025.1 229 YEVSPWFALPNNMANSAILQILAQEprdkKDLHILDIGVSHGMQWPTLLEALCCRPEGPPlQVRITVVSDLTADipfsVGPPSYNY 314
************************99888889************************99999*********99999998888999** PP
GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
+++L fA++l+++++++v+ +++ ++++p+E+ +V+ +++l++l +++++r e Lk+++sl+Pk v+++e+ +
Rsa1.0_00032.1_g00025.1 315 ASQLIGFARSLNINLQISVI-------DKFQLIDTSPHETFIVCAQFRLYQLK---NTIPDARCEALKALRSLNPKGVILCEHYGE 390
******************96.......566889*******************8...78888889******************9755 PP
GRAS 248 h...nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
++ +F++ f+++l+y ++++ds++ ++ +e+++ Er+l++ e+++v++ +g+ e +e W er+++ GF++ +++
Rsa1.0_00032.1_g00025.1 391 GsssSNVDFAADFSKKLDYLWKFLDSTSYGF----KEENSEERKLMEGEATKVLMSSGDT----SEGKEMWYERMRKTGFSAEAFG 468
52125559*******************9997....8888889999999***********9....9999****************** PP
GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
e+a + ak+llrk++ + ++++ e+g + l Wk++++ ++S W+
Rsa1.0_00032.1_g00025.1 469 EEAIDGAKSLLRKYDnN--WEIKMEDGDTFagLLWKGEEVSFCSLWK 513
***************44..6666444433336**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 513 aa
Download sequence Send
to blast |
MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFSDSDLLNE FDWSQTWEWD HQTQTQDPGF 60
DFLHSYSQDL NAYIGCEAAN VEVATGVPVI DSDPPPVLQL PNDQSKKRNR DELNDPHVVK 120
RSARSKKKAD KSSEVSRKDV NKVERWAEQL LNPCALAITA RNSSRVQHYI CVLSELASSS 180
GDANHRLASF GLSALKKHIS TSFVPSSPSS VTFASAEVKM FQKTLLKFYE VSPWFALPNN 240
MANSAILQIL AQEPRDKKDL HILDIGVSHG MQWPTLLEAL CCRPEGPPLQ VRITVVSDLT 300
ADIPFSVGPP SYNYASQLIG FARSLNINLQ ISVIDKFQLI DTSPHETFIV CAQFRLYQLK 360
NTIPDARCEA LKALRSLNPK GVILCEHYGE GSSSSNVDFA ADFSKKLDYL WKFLDSTSYG 420
FKEENSEERK LMEGEATKVL MSSGDTSEGK EMWYERMRKT GFSAEAFGEE AIDGAKSLLR 480
KYDNNWEIKM EDGDTFAGLL WKGEEVSFCS LWK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX242549 | 0.0 | JX242549.1 Hirschfeldia incana isolate HiNSP1 nodulation signaling pathway 1-like protein gene, complete cds. |
