PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00032.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 498aa MW: 54900.9 Da PI: 8.6117

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00032.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Rsa1.0_00032.1_g00002.1 92 FVCEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	91	114	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.42E-6	91	114	No hit	No description
PROSITE profile	PS50157	10.949	92	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	92	114	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.9E-5	92	114	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	134	164	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.42E-6	164	189	No hit	No description
SMART	SM00355	180	169	189	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MMSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHQQE QQQFFVPEPQ 60 PQKKKRSQPG NPDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 120 KQRSNKEVTR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVI PQNQNHQPNP 240 LMIHQSSSHH HHQAQPNMNI SSHNINSLHF EINNTGTNNN NSSSNHLHAF SMKKEQQQTS 300 DQIINYHHHG VPPWLAPQPQ HLTSSNPNPS NGGGGGGGGL FSLAASPAMS ATALLQKAAQ 360 TGSTKTTPLP PTTDFERSHN TLATTMAAMM TSPSGFISSN NSNQVLFQDY NASGFNHHHG 420 GQEAFDDTFN GFLRTDTSTA GSDKNKSGGG SGGGEGLTRD FLGIRPLMSQ NEILSFAGLG 480 NCINDVASDQ LHPKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MMSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHQQE QQQFFVPEPQ  60
PQKKKRSQPG NPDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  120
KQRSNKEVTR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVI PQNQNHQPNP  240
LMIHQSSSHH HHQAQPNMNI SSHNINSLHF EINNTGTNNN NSSSNHLHAF SMKKEQQQTS  300
DQIINYHHHG VPPWLAPQPQ HLTSSNPNPS NGGGGGGGGL FSLAASPAMS ATALLQKAAQ  360
TGSTKTTPLP PTTDFERSHN TLATTMAAMM TSPSGFISSN NSNQVLFQDY NASGFNHHHG  420
GQEAFDDTFN GFLRTDTSTA GSDKNKSGGG SGGGEGLTRD FLGIRPLMSQ NEILSFAGLG  480
NCINDVASDQ LHPKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-31	165	233	3	71	Zinc finger protein JACKDAW
5b3h_F	4e-31	165	233	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	131	KLKQRSNKEVTRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00032.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018493267.1	0.0	PREDICTED: protein indeterminate-domain 11
Refseq	XP_018493268.1	0.0	PREDICTED: protein indeterminate-domain 11
Refseq	XP_018493269.1	0.0	PREDICTED: protein indeterminate-domain 11
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1J3FCK1	0.0	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRING	XP_006407162.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]