PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00028.1_g00052.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 410aa    MW: 45599.6 Da    PI: 4.844
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00028.1_g00052.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.9e-32229283155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+
  Rsa1.0_00028.1_g00052.1 229 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPVLTIYHVKSHLQKYRT 283
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-16227283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-29227285IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22229283IPR006447Myb domain, plants
PfamPF002492.7E-9231282IPR001005SANT/Myb domain
PfamPF143794.6E-20317363IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MTMANDFGYS TSFSALHTPP VEDRYPNSLW GSSGQELMNN PVPYQVVGSG GNSGGYMFPS  60
PSGLCNVSPV LSHGKMPQTQ PPVATMPSDR QDCFLEAQSS SLMMNHQHLL PEFSDPLEDF  120
FDFSDHVPAL NPTQGESSDL RVGGSSVEIH EKSEWQSWAD QLMSVDDNGS EPNWSELLGD  180
PNPHNPTPTP SLDVPRQEIV VANQQQKQQN QVVSLEEQLN SSASGATTKQ RMRWTPELHE  240
AFVEAVNQLG GSERATPKAV LKLLNNPVLT IYHVKSHLQK YRTARYKPET SEATGEPQEK  300
KLTSIEDIKS LDMKTSVEIT QALRLQMEVQ KRLHEQLETQ RALQLQIEKQ GQYLQMMFEK  360
QQKLEENNKS SSSSKQQCNG ASAEAESGVV VTQALDQTES SASRKRARED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-27229287260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00028.1_g00052.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527941e-168AK352794.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440043.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A3P6B7D50.0A0A3P6B7D5_BRACM; Uncharacterized protein
STRINGBra020622.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]