PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00028.1_g00044.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 390aa MW: 43857.1 Da PI: 7.356

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00028.1_g00044.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3e-33	210	268	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt gC vkk+vers+++p++v +tYeg+H+h+ Rsa1.0_00028.1_g00044.1 210 LDDGYRWRKYGQKAVKNSPYPRSYYRCTIVGCGVKKRVERSSDNPSIVMTTYEGQHTHP 268 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-33	195	270	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-29	203	270	IPR003657	WRKY domain
PROSITE profile	PS50811	31.697	205	270	IPR003657	WRKY domain
SMART	SM00774	4.4E-40	210	269	IPR003657	WRKY domain
Pfam	PF03106	9.6E-27	211	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEKKIKEDHH QEQQREELNS TKNTETTTST HMMNLVTSSD HHHHQMELAG NNMNLSTIFD 60 TPISSPFPYS YFSDHSSNNP NSFLYLLRQD QPQFASSSNS SSFSFDAFHL QNNTNHFFTD 120 LSTSQPITKA ESSEVVSTTP TSPNSTSFSS SSNEAANENI NKEVTVKDQE DGDQHEPKGT 180 KPQMKAKKKQ QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTIVG 240 CGVKKRVERS SDNPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDLGAT TASSSSSFSI 300 PQPRYLLSQH HQPYSSMYNK NSLSMINRSS SSDGTFVNPG SSSFHGFAYE MSQASTSTTT 360 IRDHGLLQDI LPSQIRSDTI NTRTNEEDKI

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEKKIKEDHH QEQQREELNS TKNTETTTST HMMNLVTSSD HHHHQMELAG NNMNLSTIFD  60
TPISSPFPYS YFSDHSSNNP NSFLYLLRQD QPQFASSSNS SSFSFDAFHL QNNTNHFFTD  120
LSTSQPITKA ESSEVVSTTP TSPNSTSFSS SSNEAANENI NKEVTVKDQE DGDQHEPKGT  180
KPQMKAKKKQ QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTIVG  240
CGVKKRVERS SDNPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDLGAT TASSSSSFSI  300
PQPRYLLSQH HQPYSSMYNK NSLSMINRSS SSDGTFVNPG SSSFHGFAYE MSQASTSTTT  360
IRDHGLLQDI LPSQIRSDTI NTRTNEEDKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	203	270	10	77	Probable WRKY transcription factor 4
2lex_A	3e-26	203	270	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00028.1_g00044.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430059	0.0	KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435066.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-159	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A398AMI1	0.0	A0A398AMI1_BRACM; Uncharacterized protein
STRING	Bra020628.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-121	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]