PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00024.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27780.1 Da PI: 4.3534 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.5e-14 | 56 | 99 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ +K++Ka+i + A+ YI+ Lq Rsa1.0_00024.1_g00014.1 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.177 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-17 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.29E-13 | 52 | 99 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-17 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-14 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-11 | 56 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN 60 RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EEAKLEAEIR ELESTPKSSL 120 SFSKDFDRDL LVPVTSKKMK QLDSGSSRSL IEVIEVTSMG DRVMVVNVTC NKRTDTMVKL 180 CEVFESLNLK ILTSNLNSFS GMIFYTLFIE ADEEEQEVVR LKIETGIGAY NETQSPTWSI 240 DSLY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 54 | 108 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00024.1_g00014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY086666 | 0.0 | AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018464657.1 | 1e-180 | PREDICTED: transcription factor bHLH35 isoform X2 | ||||
Swissprot | Q2HIV9 | 1e-160 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A078IEW9 | 1e-172 | A0A078IEW9_BRANA; BnaA02g08320D protein | ||||
TrEMBL | A0A3P6A2S2 | 1e-172 | A0A3P6A2S2_BRACM; Uncharacterized protein | ||||
STRING | Bra020462.1-P | 1e-171 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-148 | bHLH family protein |