PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00021.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 29032.5 Da PI: 6.3486 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 180 | 220 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq Rsa1.0_00021.1_g00001.1 180 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 220 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 172 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 175 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-12 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-11 | 179 | 224 | No hit | No description |
Pfam | PF00010 | 1.9E-8 | 180 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DEMLGLASLY NDHLHHHQNN ALPSDHHAFL 60 NPDMFPFSAM TGGNLPTMLD DSWEQGQLQD TATLKRKLLN VENHNTYSNC DVTRQELVKA 120 KKKQRVSQES NTVDESNTNW RDGQSQSNSS DDEKASVTSV KGKTRATKGT ATDPQSLYAR 180 KRREKINERL KTLQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDE LWMYAPLAYN 240 GLDMGFHHNL LSRLM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 184 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00021.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085436 | 0.0 | AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489315.1 | 0.0 | PREDICTED: transcription factor bHLH54-like | ||||
Swissprot | Q8LEG1 | 1e-155 | BH054_ARATH; Transcription factor bHLH54 | ||||
TrEMBL | V4MQV2 | 1e-169 | V4MQV2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415733.1 | 1e-170 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 1e-147 | root hair defective 6-like 4 |