PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00020.1_g00053.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 391aa MW: 45530.2 Da PI: 5.8894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00020.1_g00053.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.7e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik++d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+W Rsa1.0_00020.1_g00053.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDIDLYKIEPWDLQElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKAGFW 91 69**************************.99**********9544444444359********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katg+dk+++ +++l+g++ktLvfykgrap+g+k+dW+mheyrle Rsa1.0_00020.1_g00053.1 92 KATGRDKAIYL-RHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 *******.899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	7	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPHEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS 180 FMSSELETNG PRRILPNHQH QHQHQYHLPY GFSASAYALN SPNLLCKQEL QYNHLVQNHH 240 LLHEPPLSFL QLPQLEIPIQ SQDNSNSNYF PYETSNNDTN SSHIANLQQS NLAHEEQLNQ 300 GNQVFSSPYI NSGNEQTMDQ VTDWRVLDKF VASQLSNEEA ATASASLQNN AKDTSNLEYQ 360 VDEEKEEERV SDMGEEYDAS TSSSCQIDLW K

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH  60
EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPHEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS  180
FMSSELETNG PRRILPNHQH QHQHQYHLPY GFSASAYALN SPNLLCKQEL QYNHLVQNHH  240
LLHEPPLSFL QLPQLEIPIQ SQDNSNSNYF PYETSNNDTN SSHIANLQQS NLAHEEQLNQ  300
GNQVFSSPYI NSGNEQTMDQ VTDWRVLDKF VASQLSNEEA ATASASLQNN AKDTSNLEYQ  360
VDEEKEEERV SDMGEEYDAS TSSSCQIDLW K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00020.1_g00053.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975667	0.0	KM975667.1 Brassica napus NAC transcription factor 7.1 (NAC7.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449566.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X1
Refseq	XP_018449567.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X1
Refseq	XP_018451870.1	0.0	PREDICTED: NAC domain-containing protein 7 isoform X1
Swissprot	Q9FWX2	0.0	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A3P6CD96	0.0	A0A3P6CD96_BRACM; Uncharacterized protein
STRING	Bra016783.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	0.0	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]