PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00019.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 234aa    MW: 25891.6 Da    PI: 5.3001
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00019.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21e-05533634
                 zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                             C+ ++++e++ fC  ++  lC+ C  + H
  Rsa1.0_00019.1_g00021.1  5 CDVCDKEEASVFCCADEAALCNGCDHHVH 33
                             *************************9988 PP
2zf-B_box29.21.9e-095592338
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                             ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  Rsa1.0_00019.1_g00021.1 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
                             789*****************************767876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
SMARTSM003366.2E-6447IPR000315B-box-type zinc finger
CDDcd000211.04E-5533No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006437.0E-85593IPR000315B-box-type zinc finger
CDDcd000216.70E-1156100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDH HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGIKLSSSLS SYPTTASNSN  120
SNSAVALGRA KTRPKSVWGE VPSSASSEVF GSSHSTTTSN YYYGLEEQAS DSGSGSISEY  180
LMDTLPGWRV EDLLEDPSCV SYDDIFTNNN KNGVYDGSSS QYEHQGFWEQ KPFS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00019.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469139.11e-165PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-126BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A398AGZ81e-138A0A398AGZ8_BRACM; Uncharacterized protein
TrEMBLM4D5X21e-138M4D5X2_BRARP; Uncharacterized protein
STRINGBra011879.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-109DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]