PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00018.1_g00047.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 396aa MW: 45918.6 Da PI: 5.576

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00018.1_g00047.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.6	7.1e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPtdeelv++yL+kkv+++++e+ ++ik++d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk g+W Rsa1.0_00018.1_g00047.1 7 VPPGFRFHPTDEELVDYYLRKKVASNRIEI-DFIKDIDLYKIEPWDLQElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKVGFW 91 69**************************.99**********9544444444359********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katg+dk+++ +++l+g++ktLvfykgrap+g+k+dW+mheyrle Rsa1.0_00018.1_g00047.1 92 KATGRDKAIYL-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 *******.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-59	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.828	7	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SNRIEIDFIK DIDLYKIEPW DLQELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKVGF WKATGRDKAI YLRHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYGDQLS 180 FMASELETNG LRRILPNHQQ QQHQQEHQQQ LSYGFNSSVY ALNSPNLQCK QELELQYNHL 240 VQQHDLFHES PLSLFQLPQL ESPNVQQANN NNSLPYGTSN NDNNSSEIAN LQQPNLAHEE 300 QLNQGNQNFS TLYMNSENEQ GVDQVTDWRV LDKFVASQLS NEDAAATTSA SLQKNAKDTS 360 NVEYQVDEEK DQKRVSDMGE EYAASTSSSC QIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SNRIEIDFIK DIDLYKIEPW DLQELCKIGH  60
EEQSDWYFFS HKDKKYPTGT RTNRATKVGF WKATGRDKAI YLRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYGDQLS  180
FMASELETNG LRRILPNHQQ QQHQQEHQQQ LSYGFNSSVY ALNSPNLQCK QELELQYNHL  240
VQQHDLFHES PLSLFQLPQL ESPNVQQANN NNSLPYGTSN NDNNSSEIAN LQQPNLAHEE  300
QLNQGNQNFS TLYMNSENEQ GVDQVTDWRV LDKFVASQLS NEDAAATTSA SLQKNAKDTS  360
NVEYQVDEEK DQKRVSDMGE EYAASTSSSC QIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00018.1_g00047.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029761	0.0	BT029761.1 Arabidopsis thaliana At1g12260 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013671757.1	0.0	NAC domain-containing protein 7-like isoform X1
Swissprot	Q9FWX2	0.0	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	M4DTA7	0.0	M4DTA7_BRARP; Uncharacterized protein
STRING	Bra019750.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	0.0	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]