PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00123.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 874aa    MW: 97174 Da    PI: 5.2893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00123.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-183177148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Rsa1.0_00017.1_g00123.1 31 KGQWTPEEDEVLRKAVERFQGKNWKKIAECVK-DRTDVQCLHRWQKVL 77
                             799****************************9.************986 PP
2Myb_DNA-binding58.61.4e-1883129148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+W++eEd  ++ +v+++G+  W+tI+++++ gR +kqc++rw+++l
  Rsa1.0_00017.1_g00123.1  83 KGPWSKEEDNTIIALVEKYGPSKWSTISQHLP-GRIGKQCRERWHNHL 129
                              79******************************.*************97 PP
3Myb_DNA-binding51.81.8e-16135177145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              +++WT+eE++ l++a++ +G++ W+  ++ ++ gR+++ +k++w+
  Rsa1.0_00017.1_g00123.1 135 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNAIKNHWN 177
                              689*******************.*********.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4252677IPR017930Myb domain
SuperFamilySSF466891.44E-182991IPR009057Homeodomain-like
SMARTSM007174.1E-153079IPR001005SANT/Myb domain
PfamPF002491.5E-153177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-223289IPR009057Homeodomain-like
CDDcd001675.09E-143477No hitNo description
PROSITE profilePS5129431.51778133IPR017930Myb domain
SuperFamilySSF466894.49E-3180176IPR009057Homeodomain-like
SMARTSM007171.1E-1782131IPR001005SANT/Myb domain
PfamPF002492.2E-1783129IPR001005SANT/Myb domain
CDDcd001672.42E-1585129No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2790136IPR009057Homeodomain-like
PROSITE profilePS5129418.455134184IPR017930Myb domain
SMARTSM007171.9E-14134182IPR001005SANT/Myb domain
PfamPF002492.5E-14135178IPR001005SANT/Myb domain
CDDcd001675.58E-11137177No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21137184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MKREMKAPNV TEGNLQGKHG RMSGPARRST KGQWTPEEDE VLRKAVERFQ GKNWKKIAEC  60
VKDRTDVQCL HRWQKVLNPE LVKGPWSKEE DNTIIALVEK YGPSKWSTIS QHLPGRIGKQ  120
CRERWHNHLN PGINKNAWTQ EEELTLIRAH QIYGNKWAEL MKFLPGRSDN AIKNHWNSAV  180
KKKLDSYYAS GLLDQCQSSP LVPLQNRSIA SSSSLMHSSG DESSFRQGAD AEESECSQAS  240
TVFSRSQSNN DLLDEVKPAD EELFYIPELP SGLEHQISNS PSHAESYCPS FEDVEIVVPE  300
ISCEAESSKM YEKLNCSNEV RTTTATEDHL QSVSNNVKQD LDLDCPQLLA HNMDRDEKND  360
QPSLPDSETG IHPQPQTLTT DVECCRVLFP YAMKGSCASS SEQGQNSKNG KGETHAHDTG  420
KIPALSWHHS NPEGLDGVPL LYSAEKDSVL LHNDSIQGCD LLGAPALERE TDDTNDGHVT  480
SHGNDGILEQ QELSYITKDS LKLAPLNNFS SPSRVNKIYF PIDDKPAEKE KGSLCYEPPR  540
FPSADIPFFS CDLVPPNSDL RQEYSPFGIR QLMNCTSTPL RLWDSPCRHD KSPDVILKDA  600
AKSFSGAPSI LKKRHRELLS ECPDNKSKCA SSSEAKEDSK ETLESGGVSS AKTDQETRRS  660
LVYYNDDVEM QLSSPDKNGS IPDNKVNTVG KDPFTGDSIP LSAITENKTN TAESSFDIIE  720
NYSIFDGTPF KKLLDTPSPW KSPLLFGSFL QSPNLPPEIT FEDIGCFMSP GERGYDAIGL  780
MKHLSEHTAT AYADALEVLG NDTPETILKK RQLNKSIQGK ENQHWPHDQL ENRSQVEGRA  840
LDFSNCGTPV KPNVSSASPG GYSSPSSYLL KSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-67311846159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-67311846159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00123.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472285.10.0PREDICTED: myb-related protein 3R-1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A0D3A2H90.0A0A0D3A2H9_BRAOL; Uncharacterized protein
STRINGBo1g010040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]