PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00017.1_g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 473aa MW: 53606.1 Da PI: 7.0702 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.4 | 7.3e-20 | 14 | 97 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffk l ++++s+ + +p kf++eh +g k+e+kt++l++ ++W+vk+ ++++ lt+GWkeFvka++L++gDf+vF+++g Rsa1.0_00017.1_g00036.1 14 FFKPL--LSSSQSH-FNIPVKFFSEHiEG-KHEGKTVSLRSdALAKTWKVKM--EGQG----LTEGWKEFVKAHDLRVGDFLVFRHEG 91 67777..5555555.99*********644.56789*****96677*******..8887....***********************999 PP SSEE..EE CS B3 87 rsefelvv 94 ++ f +v Rsa1.0_00017.1_g00036.1 92 DMLF--NV 97 8877..44 PP | |||||||
2 | B3 | 61.3 | 1.6e-19 | 145 | 236 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ +++++ ++lp fa+++g+ + s++++l++e grsW +l + sgr+v+ +GW +F+ an+ ++gD+ +Fkl + + + Rsa1.0_00017.1_g00036.1 145 YVTVFSMTRDTVSLPTAFAKRNGLYEV-SQKIVLMNEGGRSWPSEL-KKLESGRIVIVRGWTSFCVANKFQVGDSWTFKLLR-NAE 227 55666788999***********99865.56****************.4667788*************************998.677 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 ++v++++++ Rsa1.0_00017.1_g00036.1 228 TPVFQLCSR 236 79***9987 PP | |||||||
3 | B3 | 42.1 | 1.6e-13 | 268 | 359 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 + ++l++g lp +f++ ++++k+e +++l d++g +W + l+++++sg+ ++ +GWk+F+ n++ + ++++++l+ + Rsa1.0_00017.1_g00036.1 268 TLNSLERGKQHLPLSFTSVNDLIKPE--KVILVDKNGDEWVMDLKVDNRSGQmcIMSVNGWKSFCAVNEVGAEESLTLELIL-GAA 350 56778889999*********999666..8*****************888877777788*********************996.677 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 ++v+k+++k Rsa1.0_00017.1_g00036.1 351 SPVLKFCSK 359 789999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-25 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-24 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.535 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.91E-19 | 12 | 98 | No hit | No description |
Pfam | PF02362 | 2.1E-14 | 14 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-24 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-18 | 139 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.424 | 141 | 237 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.75E-18 | 141 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-18 | 143 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-20 | 145 | 237 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.64E-16 | 151 | 235 | No hit | No description |
PROSITE profile | PS50863 | 10.87 | 262 | 360 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.17E-10 | 262 | 358 | No hit | No description |
SMART | SM01019 | 6.8E-16 | 262 | 360 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.18E-12 | 264 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-12 | 265 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-12 | 265 | 359 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MENASLFSPA NPHFFKPLLS SSQSHFNIPV KFFSEHIEGK HEGKTVSLRS DALAKTWKVK 60 MEGQGLTEGW KEFVKAHDLR VGDFLVFRHE GDMLFNVTAL GPSCCEIQYA LFGSRHKDKE 120 EEEDETERSD KETEDNDLPT CFSQYVTVFS MTRDTVSLPT AFAKRNGLYE VSQKIVLMNE 180 GGRSWPSELK KLESGRIVIV RGWTSFCVAN KFQVGDSWTF KLLRNAETPV FQLCSRAKTE 240 RKKKETLSKE ANIAERTDGN RFVNLTPTLN SLERGKQHLP LSFTSVNDLI KPEKVILVDK 300 NGDEWVMDLK VDNRSGQMCI MSVNGWKSFC AVNEVGAEES LTLELILGAA SPVLKFCSKM 360 EQSPLEPAEA RAHKRARVQT CIQEIRPKLE IREETAEEGE PSHRTRASDK TITNRGNLRE 420 TLPSSIPNQL MNKVKHSVLC TLTSIRLFRE ELKTMEQKLE DSLKDIDNLG NVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00017.1_g00036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467816.1 | 0.0 | PREDICTED: B3 domain-containing protein REM8-like | ||||
Swissprot | Q8H2D1 | 1e-171 | REM8_ARATH; B3 domain-containing protein REM8 | ||||
TrEMBL | V4MMK3 | 0.0 | V4MMK3_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006412570.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 1e-170 | B3 family protein |
Publications ? help Back to Top | |||
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