PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00016.1_g00127.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 337aa    MW: 37741.4 Da    PI: 6.6316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00016.1_g00127.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ede+lv++vk++G  +W++ ++  g++R++k+c++rw +yl
  Rsa1.0_00016.1_g00127.1 14 KGPWTPDEDEKLVKYVKKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding50.64.4e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++++E++ ++++++  G++ W+tIa+ ++ gRt++++k++w+++l
  Rsa1.0_00016.1_g00127.1  67 RGKFSPDEEQTILNLHAVVGNK-WSTIANNLP-GRTDNEIKNFWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.545961IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-25964IPR009057Homeodomain-like
SuperFamilySSF466894.4E-3111108IPR009057Homeodomain-like
SMARTSM007176.0E-161363IPR001005SANT/Myb domain
PfamPF002496.3E-181461IPR001005SANT/Myb domain
CDDcd001675.59E-131661No hitNo description
PROSITE profilePS5129425.95962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2765117IPR009057Homeodomain-like
SMARTSM007174.5E-1566114IPR001005SANT/Myb domain
PfamPF002499.7E-1567112IPR001005SANT/Myb domain
CDDcd001672.91E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRPPSGDDS SLKKGPWTPD EDEKLVKYVK KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPDEEQTILN LHAVVGNKWS TIANNLPGRT DNEIKNFWNT HLKKKLIQMG  120
VDPMTHRPRT DVLSGLSQLI SLSSDLRGFV DLQQQFPVNQ EQTILKLQTE MAKLQLFQYL  180
LQPPSMYNNI NPNDVDTLSL LNSIASFKDT TTSKNLDLSS YIQEFNTLPS LKSLNANIGP  240
SSVSPQNPVE NHFKFFNQRE NLLISPSWLS DPSSSNQSLL PSLDPSSALT DDLIRSQYVI  300
EDVNSNLTSS SCQESAASAS AAWPDHLLDD SIFFDIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00016.1_g00127.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444283.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLV4KSR40.0V4KSR4_EUTSA; Uncharacterized protein
STRINGXP_006399522.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-163myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]