PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00015.1_g00081.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 153aa MW: 17573.2 Da PI: 9.6204 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.1 | 6.1e-10 | 9 | 32 | 1 | 24 |
S---SHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKA 24 kr +++ nrqvt+skR+ gilKKA Rsa1.0_00015.1_g00081.1 9 KRLDSSGNRQVTYSKRKCGILKKA 32 688999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.9 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-11 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-13 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-5 | 13 | 32 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MGRVKLKIKR LDSSGNRQVT YSKRKCGILK KAIFSPTGKP TMLHGEQSCI EEVISKFAQL 60 TPQERTKRKL ESLEALKKTF KKLDHDVNIH DFFRSKELPV YPNCFFESVK QEDQKYSNPA 120 QHFEQLGQEG DGCLGLQRIG EEYSYPTPFG TTL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00015.1_g00081.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB094116 | 7e-64 | AB094116.1 Arabidopsis thaliana At1g18750 mRNA for MADS-box protein, partial cds. | |||
GenBank | AY143172 | 7e-64 | AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013682304.1 | 3e-48 | agamous-like MADS-box protein AGL65 | ||||
Refseq | XP_013682306.1 | 3e-48 | agamous-like MADS-box protein AGL65 | ||||
Swissprot | Q7X9I0 | 3e-46 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A3P6FBP9 | 3e-47 | A0A3P6FBP9_BRAOL; Uncharacterized protein | ||||
STRING | Bra031049.1-P | 9e-48 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-48 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
---|---|---|---|
|