PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00015.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 448aa    MW: 48979.8 Da    PI: 4.8478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00015.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06393415426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++C+ff     C+ G++C F H+
  Rsa1.0_00015.1_g00005.1 393 RPCMFFNTPRGCRNGASCLFQHD 415
                              89********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.155389417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5394422IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MRALQKSKRV SWPPDFKLCQ NICVVLSLML FGYMFEIAAP MVRLFTSEDS PSQVGSESQD  60
HFQAKSWEAS HPSDEDNLPP GFGGLFSPNE SLINLSDIPI IKWQCSVRIL LDEEWSVVAG  120
DESKEVEAQN QRELRVLEAF YPAASSIPPN PSVAADVDNS DYDDQQTVVI PFLVVEDDDV  180
VMDTAPILPT QSGVDVGTVQ SVRDENTSTS STLPPATSEI MAALAALSNI KEQGSSSMID  240
PDLLMKFLSN PKMMESLVAN CGSAGSVSSS SATHEANGVV TTTAPVSSNG QYNPQPAVSH  300
IPPPMVYPPT PAPSDQSNYG APPPLAARDA SYYKSLIQKH GGERQEALPA QQHLGGYRHS  360
LQPGRGGPNP EMVNNNNNNN NQRPRDSKPK IMRPCMFFNT PRGCRNGASC LFQHDATTTA  420
YQPRNINNRN INNNPEMQFA KRMRFDRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00015.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439101.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A397Z1T40.0A0A397Z1T4_BRACM; Uncharacterized protein
TrEMBLA0A3P5YEL30.0A0A3P5YEL3_BRACM; Uncharacterized protein
STRINGBo5g027940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]