PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00014.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 456aa    MW: 49130.7 Da    PI: 9.6241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00014.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05202224223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               C+ Cg++F+  ++L+ H+ + H
  Rsa1.0_00014.1_g00024.1 202 ACSQCGEVFPKLESLELHQAVrH 224
                              6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808201229IPR007087Zinc finger, C2H2
SuperFamilySSF563991.92E-20226452No hitNo description
Gene3DG3DSA:3.90.228.103.5E-13228452IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MALLTILPEN AEPPKHTPPP SKRKKRENPT EKPQKPHKPQ KQKAAAPQKQ PSSWGQIKNL  60
LTCKQIEGSR VHDPSKNSQP APSTTANSSP SKLSSSCSSI CSFRDVAHGN TRVVHRADNS  120
PEVAKSATAD SETRLLTRKP GQHGSSSRSL TSGSTRSNAS GSYTSSSTTS FRAMQFRKLS  180
GCYECHMIVD PSRYPISPRV CACSQCGEVF PKLESLELHQ AVRHAVSELG PEDSGRNIVE  240
IIFKSSWLKK DSPICKIERI LKVHNTQRTI QRFEDCRDAV KARALQTTRK DARCAADGNE  300
LLRFHCTTLT CSLGSRGSSS LCPNLPNCGV CNVIRHGFQG KSGAGGGAAT AASSGGVMTT  360
ASSGRADDVL TCGDDVRRVM LVCRVIAGRV KRVDLPAEEK KSPVEDNSTV GVSSSGGVFD  420
SVVVNAGVYS NLEELVVYNP RAILPCFVVI YKVLES
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00014.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443152.10.0PREDICTED: uncharacterized protein LOC108814994
TrEMBLA0A3N6QDS20.0A0A3N6QDS2_BRACR; Uncharacterized protein
STRINGBo6g119810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein