PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00011.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 523aa MW: 57878.1 Da PI: 6.9461 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.6 | 1.8e-34 | 47 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Rsa1.0_00011.1_g00005.1 47 LPAGVKFDPTDQELM-EHLEAKVLVKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKi 130 799************.99******9995543233444334666646**********.555666799******************87 PP NAM 78 .............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Rsa1.0_00011.1_g00005.1 131 qtecdnnmqgsgsSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195 999999998887766788************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-38 | 43 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.578 | 47 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-15 | 48 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MSKSSHAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL 60 MEHLEAKVLV KDIKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDNNMQG SGSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN 180 RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSTSTLNA IGGGPGEVNR 240 GGGGGEYHMR RDSGTISGGS CSSSREIMNA DHTNRSDEVG GVGGGVVAVP ATTTAVPAGL 300 PSYAMDQLSF VPFMKSFDEM ARRETPQTGQ ATCEDVMAEQ HRLRHHHHHA SPSATSNRGA 360 HDHHHPQHHQ QQQRHHAFNI SQPTHPISTI ISPSTSLHHA SVNILDDNPY HVHRILLPNE 420 NYQIQQQHQE GEEEHNDGKM GGRSASGLEE LIMGCTSSTT HHDVKDGSSS MGNQQEAEWL 480 KYSTFWPAPG SSDNQDHHGV CQRVNQEECG VVETMWTRDA ELA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00011.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161574 | 0.0 | AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018460078.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | M4E5U8 | 0.0 | M4E5U8_BRARP; Uncharacterized protein | ||||
STRING | Bra024152.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6635 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 0.0 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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