PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00009.1_g00045.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 764aa    MW: 84895.5 Da    PI: 5.3937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00009.1_g00045.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3727.7e-1143877571373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  
  Rsa1.0_00009.1_g00045.1 387 LRTLLVLCAQAVSVDDRRTASEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYIS 469
                              5789**************************************************************9999...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              v+P+ k + + aN+ +++ ++ +e++Hi+Df+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e + etg+rLa++++
  Rsa1.0_00009.1_g00045.1 470 VCPFKKAAIIFANHSVMRLTADAETIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVDETGRRLARYCQ 555
                              *****************************************************************99******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              + +vpfe+n+ +a+++e++++e+L++k+gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++r
  Rsa1.0_00009.1_g00045.1 556 RYKVPFEYNA-IAQKWETIRVEDLKIKEGEFTVVNSLFRFKNLLDETVVVNSPRDAVLKLIRQVNPNVFIQAVLSGSYNAPFFVTR 640
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal +ysalfd+ ++kl+re+e r + E+e+ grei+nvvaceg+er+er et+++W++r+ +aGF+++p++++ +++ k+ ++
  Rsa1.0_00009.1_g00045.1 641 FREALFHYSALFDMCDSKLSREDEMRLMFEKEFYGREIMNVVACEGTERVERPETYKQWQARVIRAGFRQLPVEKELMQNLKAKIE 726
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              + +++ + ++++ ++l++gWk+r +++ S+W
  Rsa1.0_00009.1_g00045.1 727 NGYDKNFDIDQNGNWLLQGWKGRIVYASSVW 757
                              ***999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.002361738IPR005202Transcription factor GRAS
PfamPF035142.7E-111387757IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MGSYSGGSLD GFDFTSEFDD LPASNQTVDS SDGFYLDDPL LNFASFDHYS SAPHPPPETY  60
HHHPQKNNIA AAAASSSGDR SSSPSDDSEF SDSVLKYISQ VLMEEDMEEK PCMFHDALAL  120
QAAEKSLYEA LGEQYPSSTS SMDLGASYPE KLSPDGSFPS GGGFSDYAST TTTTSSDSHW  180
SVDGLENNNN RPSWLQTPIP SNFVFQSTSR SSSVTSGGGG NSDLVSRMFK DSELAMQFKR  240
GVDEASKFLP KSSQLFIDVD SYVPKNSSSE ENNTSEVSVK TEKRDEADHP PPPPSNRLTG  300
KKSHWRDEDS DLVEERSNKQ SAVYVEETEL SEMFDKILLC GGTGQPVCIT HQKFQTESNG  360
GGGGGGAKAR GKKSTGNDSK KETAADLRTL LVLCAQAVSV DDRRTASEML RQIREHSSPL  420
GNGSERLAHY FANSLEARLA GTGTQIYTAL SSKKTSAADM LKAYQTYISV CPFKKAAIIF  480
ANHSVMRLTA DAETIHIVDF GISYGFQWPA LIHRLSFRPG GPPKLRITGI ELPQRGFRPA  540
EGVDETGRRL ARYCQRYKVP FEYNAIAQKW ETIRVEDLKI KEGEFTVVNS LFRFKNLLDE  600
TVVVNSPRDA VLKLIRQVNP NVFIQAVLSG SYNAPFFVTR FREALFHYSA LFDMCDSKLS  660
REDEMRLMFE KEFYGREIMN VVACEGTERV ERPETYKQWQ ARVIRAGFRQ LPVEKELMQN  720
LKAKIENGYD KNFDIDQNGN WLLQGWKGRI VYASSVWVPS SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4939476125381Protein SCARECROW
5b3h_D3e-4939476125381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00009.1_g00045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450564.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3N6RAA30.0A0A3N6RAA3_BRACR; Uncharacterized protein
STRINGBo01118s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]