PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00008.1_g00082.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 301aa    MW: 32409.5 Da    PI: 6.6959
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00008.1_g00082.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.28.9e-163191257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             r+R+++++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Rsa1.0_00008.1_g00082.1 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 91
                             89*****************99*************************************997 PP
2Wus_type_Homeobox107.39.3e-353093265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
  Rsa1.0_00008.1_g00082.1 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 93
                             689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-142398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-92598IPR009057Homeodomain-like
PROSITE profilePS5007111.5482792IPR001356Homeobox domain
SMARTSM003892.1E-62996IPR001356Homeobox domain
PfamPF000461.5E-133191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDQEQTPHSP TGHSHSPSSS ASGSTSTETV RSRWSPKPEQ ILILESIFNS GMVNPPKEET  60
VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA AAAAATTNTC EQTMMVNTSL  120
PQYSGGDLGF GGCSTSSNYL YGGSSSQAPS FFLGLSSSPP CSSSSSTSSS ASSSTFSYGG  180
GCGCDNHSNN GMENLLARSG QMGYHEASQH QHQHHSSNLS SMFCPSDQTS NYDHYQQGSI  240
TVFINGVPTE VTSGGIDMKA TFGEELVLVH SSGVPLPTDE FGFLMHSLQH GEAYFLVPRQ  300
T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00008.1_g00082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0093270.0AC009327.8 Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440541.11e-161PREDICTED: WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J31e-144WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A3P6GHI71e-156A0A3P6GHI7_BRAOL; Uncharacterized protein
STRINGAT3G03660.21e-154(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.21e-126WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]