PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00008.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 343aa    MW: 37045.6 Da    PI: 7.4179
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00008.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.21.4e-294107199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+ +++sl+ eA+ r+ +P+yG+vg+++
  Rsa1.0_00008.1_g00015.1   4 SCNGCRVLRKGCSEDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPEHLRPGIFRSLLHEACGRIVNPIYGSVGLLW 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallke 99 
                              ++++ql+q+++e+++++e
  Rsa1.0_00008.1_g00015.1  90 SGNWQLCQSAVEAVMRGE 107
                              ***********9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3133109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-234103IPR004883Lateral organ boundaries, LOB
SMARTSM002132.4E-8249322IPR000626Ubiquitin domain
SuperFamilySSF542361.33E-11260325IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.3E-9269323No hitNo description
PfamPF002401.4E-9270322IPR000626Ubiquitin domain
PROSITE profilePS5005312.313270326IPR000626Ubiquitin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQSAV EAVMRGEPIT EMATDAATSG  120
QGPPLKMYDI RHISKDENSP AAAAAGSTDP KRGKKARRAK RVASAAAVAK PAESEGKSAG  180
GEGEASHDSS LSHQSEVVAP HEEESNISEV MTFSPTAVQC SGEIKLDLTL GLEPASRADH  240
VVPVKKRKMG VFSTWQEESS SFLIIIFYEV ADVKKNIETV QGADVYPAAK LMLIYQGKVL  300
KDETTIEENK VAESSFIVIM MTKVRAGSVV LCIIISNEML QFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00008.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2088770.0AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433202.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-147LBD41_ARATH; LOB domain-containing protein 41
TrEMBLQ7XYW21e-150Q7XYW2_BRANA; Seed specific protein Bn15D17A
STRINGBra021433.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-137LOB domain-containing protein 41