PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00005.1_g00057.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 567aa MW: 62057.3 Da PI: 6.4051

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00005.1_g00057.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.8	1.1e-08	509	561	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvk..gLtlehvkSHLQkYRl 55 rW e+ + v+a+ LGG++kAtP +l+l+++k L e+v L ++R Rsa1.0_00005.1_g00057.1 509 RWLLEMTTDLVDAIGTLGGNDKATPTDVLRLISIKhnNLIKEEVEEKLKRWRK 561 8999999************************9876337999999999999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103473	7.59E-9	22	125	IPR020846	Major facilitator superfamily domain
CDD	cd06174	1.72E-6	50	126	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	5.9E-7	51	125	No hit	No description
Pfam	PF00854	2.2E-16	100	187	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	7.59E-9	152	179	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	5.9E-7	272	342	No hit	No description
Pfam	PF00854	4.0E-5	302	348	IPR000109	Proton-dependent oligopeptide transporter family
Gene3D	G3DSA:1.10.10.60	1.3E-5	503	562	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006810	Biological Process	transport
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding
GO:0005215	Molecular Function	transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MVHESSHGAK DGSEEAFDNR GNPPDKSKTG GWLGAGLILG SELSERICVM GISMNLVTYL 60 VGDLHISSAK SATIVTNFMG TLNLLELLGG FLADAKLGRY KMVAIASSVT ALGVLLLTVS 120 TTIPSMRPPP CDDFRRLHHQ CVEANGHQLA LLYVALYTIA LGGGGIKSNG SGFESDQFDT 180 SDPKEEKTTW EEAGARDLGR DYGGRGRGFA LRNETKRNES YPPHPSLSNG YDNTTVPHTE 240 RLKCLDKAVV VTHQSSPRTK EIKEKDSWSV STVTQRIGVG LVFSMAAMAV AAVIENARRE 300 AEVGQLEFFI REAPERMKSM STVLFLSTVS MGFFVSSLLV SLVDRVTHKS WLRSNLNKAR 360 LNYFYCVGVD DLVEKEKENE KENSDGDDDI PPLPLPPPPS TSANSIGQNQ GSSLSLIIHA 420 SSDGSDNDIP PLSLSWLRLP SPSNVYEGGK QSCTSSIFHD DFAQVTETVR GHRKKTAEDL 480 VAVEPPLPLQ EALPLAPDVE VQNKRKYKRW LLEMTTDLVD AIGTLGGNDK ATPTDVLRLI 540 SIKHNNLIKE EVEEKLKRWR KAQRANT

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MVHESSHGAK DGSEEAFDNR GNPPDKSKTG GWLGAGLILG SELSERICVM GISMNLVTYL  60
VGDLHISSAK SATIVTNFMG TLNLLELLGG FLADAKLGRY KMVAIASSVT ALGVLLLTVS  120
TTIPSMRPPP CDDFRRLHHQ CVEANGHQLA LLYVALYTIA LGGGGIKSNG SGFESDQFDT  180
SDPKEEKTTW EEAGARDLGR DYGGRGRGFA LRNETKRNES YPPHPSLSNG YDNTTVPHTE  240
RLKCLDKAVV VTHQSSPRTK EIKEKDSWSV STVTQRIGVG LVFSMAAMAV AAVIENARRE  300
AEVGQLEFFI REAPERMKSM STVLFLSTVS MGFFVSSLLV SLVDRVTHKS WLRSNLNKAR  360
LNYFYCVGVD DLVEKEKENE KENSDGDDDI PPLPLPPPPS TSANSIGQNQ GSSLSLIIHA  420
SSDGSDNDIP PLSLSWLRLP SPSNVYEGGK QSCTSSIFHD DFAQVTETVR GHRKKTAEDL  480
VAVEPPLPLQ EALPLAPDVE VQNKRKYKRW LLEMTTDLVD AIGTLGGNDK ATPTDVLRLI  540
SIKHNNLIKE EVEEKLKRWR KAQRANT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a2n_A	1e-43	15	395	14	588	PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B	1e-43	15	395	14	588	PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A	1e-43	15	395	14	588	NITRATE TRANSPORTER 1.1
5a2o_B	1e-43	15	395	14	588	NITRATE TRANSPORTER 1.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Low-affinity nitrate transporter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00005.1_g00057.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the shoots by nitrate, but down-regulated in the roots. {ECO:0000269\|PubMed:12668777}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT119580	0.0	KT119580.1 Brassica juncea cultivar Varuna nitrate transporter 1.3 (NRT1.3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013692608.1	1e-137	protein NRT1/ PTR FAMILY 6.4-like
Swissprot	Q9LVE0	1e-133	PTR33_ARATH; Protein NRT1/ PTR FAMILY 6.4
TrEMBL	A0A438CJC7	1e-140	A0A438CJC7_VITVI; Protein NRT1/ PTR family 6.4
STRING	Bra031295.1-P	1e-135	(Brassica rapa)

Publications ? help Back to Top
Okamoto M,Vidmar JJ,Glass AD Regulation of NRT1 and NRT2 gene families of Arabidopsis thaliana: responses to nitrate provision. Plant Cell Physiol., 2003. 44(3): p. 304-17 [PMID:12668777] Deeken R, et al. An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach. Plant Cell, 2006. 18(12): p. 3617-34 [PMID:17172353] Tsay YF,Chiu CC,Tsai CB,Ho CH,Hsu PK Nitrate transporters and peptide transporters. FEBS Lett., 2007. 581(12): p. 2290-300 [PMID:17481610] Chen X,Lin WH,Wang Y,Luan S,Xue HW An inositol polyphosphate 5-phosphatase functions in PHOTOTROPIN1 signaling in Arabidopis by altering cytosolic Ca2+. Plant Cell, 2008. 20(2): p. 353-66 [PMID:18252844] Li JY, et al. The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Plant Cell, 2010. 22(5): p. 1633-46 [PMID:20501909] Léran S, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci., 2014. 19(1): p. 5-9 [PMID:24055139] Tong W, et al. Polyamine Resistance Is Increased by Mutations in a Nitrate Transporter Gene NRT1.3 (AtNPF6.4) in Arabidopsis thaliana. Front Plant Sci, 2016. 7: p. 834 [PMID:27379127]