PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC9991_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 34856.6 Da PI: 10.4529 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.4e-31 | 244 | 302 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+k RrC9991_p1 244 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHQK 302 9************************8766****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.7E-16 | 191 | 240 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 7.9E-33 | 230 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.113 | 237 | 303 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-26 | 241 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 242 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-27 | 244 | 301 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MTVDIMRFPK MEDQTAIQEA ASQGLKSMEH MIRLLSNRTE DHNVDCSEIT DFTVSKFKKV 60 ISLLNRTGHA RFRRGPVQSS PSSSSSSAAA PPPLPPVSQP SPPAPVLTPG SFVQSHQHSL 120 TLDFTRPSVF GAKTKSAEFA KESFSVSSNS SFMSSAITGD GSVSKGSSIF LAPTAPVASS 180 GKPPLAGLPY RKRCFEHDHS QNFSGKISAS GSGKCHCKKS KKNRMKRSVR VPAISAKIAD 240 IPVDEYSWRK YGQKPIKGSP HPRGYYKCST FRGCPARKHV ERALDDPTML IVTYEGEHRH 300 QKSAMNDNIS SSLVFGSGLN G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 230 | 300 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00278 | DAP | Transfer from AT2G24570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ384102 | 0.0 | FJ384102.1 Brassica napus cultivar Westar WRKY transcription factor 17 (WRKY17) mRNA, WRKY17-2 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477671.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SJA8 | 1e-171 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | A0A397ZLJ5 | 0.0 | A0A397ZLJ5_BRACM; Uncharacterized protein | ||||
STRING | Bra032084.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-150 | WRKY DNA-binding protein 17 |
Publications ? help Back to Top | |||
---|---|---|---|
|