PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9986_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 322aa    MW: 35648.4 Da    PI: 10.1533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9986_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-16108153247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++++ ++lG+g+W+ Ia+++ ++Rt+ q+ s+ qky
       RrC9986_p3 108 KPWTEEEHRIFLEGLTKLGKGDWRGIAKKFVTTRTPTQVASHAQKY 153
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6141225IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:1.10.10.601.2E-12101154IPR009057Homeodomain-like
PROSITE profilePS5129419.525102158IPR017930Myb domain
SuperFamilySSF466893.09E-17103158IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17105156IPR006447Myb domain, plants
SMARTSM007172.5E-12106156IPR001005SANT/Myb domain
PfamPF002497.7E-13108153IPR001005SANT/Myb domain
CDDcd001672.12E-10109154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVKEVVTTGK TCSHCGHNGH NARTCLNGVN KGSVKLFGVN ISSEPIRSPE VTALRKSVSL  60
GNLDALLAND ISNGNGDPIA AVEDNGYHSD GQIHSKTGRS AHQKKKGKPW TEEEHRIFLE  120
GLTKLGKGDW RGIAKKFVTT RTPTQVASHA QKYFLRLNAN DKRRRRASLF DISLGDQRKE  180
EKNSQVMTTN ASTSLSKFPS RQPITGSQEQ VQTQAEISNR FKNLSMEHMP IYPTVPPYYN  240
FPSVMIHPMY YYPNPEHVRY VHPSGIPVPR PLPIGMPLPQ ANDSSRIPKK DGLELDISLR  300
PPPPPQSTAE TDLAGHGVIH VK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481580.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ9FKF91e-171M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A3P6F1R40.0A0A3P6F1R4_BRAOL; Uncharacterized protein
STRINGBra012936.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-173MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]