PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9970_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 418aa    MW: 47010.2 Da    PI: 7.3326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9970_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-1099141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd     +v+q+G + W+ +++++  gR +kqc++rw+++l
       RrC9970_p1  99 KGQWTSEEDR----LVRQHGDRKWAIVSEKLE-GRAGKQCRERWHNHL 141
                      789******6....79****************.*************97 PP
2Myb_DNA-binding52.51.1e-16148189245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE++ lv+a+ + G++ W+ Ia+ ++ gRt++++k++w+
       RrC9970_p1 148 DGWSEEEEKVLVEAHIRIGNK-WAEIAKLIP-GRTENSIKNHWN 189
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.62894141IPR017930Myb domain
SMARTSM007171.6E-798143IPR001005SANT/Myb domain
PfamPF002492.2E-999141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20100149IPR009057Homeodomain-like
CDDcd001673.45E-10102141No hitNo description
SuperFamilySSF466896.79E-26121199IPR009057Homeodomain-like
PROSITE profilePS5129422.452142196IPR017930Myb domain
SMARTSM007172.9E-14146194IPR001005SANT/Myb domain
PfamPF002498.2E-15149189IPR001005SANT/Myb domain
CDDcd001672.22E-11150192No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19150194IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEHRRIAHGA APPLTAVERF LYGQNNDALT SKKQKGPKER HPPIVRRTAV SEIVNDNKEN  60
TTFGPRKEKH LVVHGRSPIG DMVVKDATTK KRPYKNLIKG QWTSEEDRLV RQHGDRKWAI  120
VSEKLEGRAG KQCRERWHNH LRPDIKKDGW SEEEEKVLVE AHIRIGNKWA EIAKLIPGRT  180
ENSIKNHWNA TKRRQNSKRE KKRQANADNN DGDDLSPAAK RPCILQDYIK SLDNKDNNND  240
DSKNENSISV LSTPNQIYSD GDSASSVLGD PYDEELVYLQ NIFENHPASL DSIGLSQISD  300
EVNQSSLSEI MIKNPNPNSH NVVQTHHHDQ GMGTVPATTS HLASDIYLSY LLNGTTSSYV  360
DPYFPSSSSS TSSTTIEQGV HSDFLVPQAN STSERRDMDL LEMIAATTQG SNIPFPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-41971952104C-Myb DNA-Binding Domain
1msf_C4e-41971952104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191202KRRQNSKREKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472526.10.0PREDICTED: myb-related protein A-like
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLA0A0D3B2R90.0A0A0D3B2R9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A2470.0A0A3P6A247_BRAOL; Uncharacterized protein
STRINGBo3g018490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]