PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC9952_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27611.2 Da PI: 6.2914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v ++G g W +++++ g++R++k+c++rw++yl RrC9952_p1 10 KGAWTAEEDYLLRECVDKFGEGKWYLVPARAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5.1e-15 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E +ll +++k+lG++ W++Ia +++ gRt++++k++w++y+ RrC9952_p1 63 RGKLSSDEVDLLSRLHKLLGNR-WSLIAGRLP-GRTANDIKNYWNTYM 108 78999*****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.434 | 5 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-21 | 7 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-28 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-9 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 61 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.58 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-9 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MDALSFRLRK GAWTAEEDYL LRECVDKFGE GKWYLVPARA GLNRCRKSCR LRWLNYLKPN 60 IKRGKLSSDE VDLLSRLHKL LGNRWSLIAG RLPGRTANDI KNYWNTYMSK KPDPFCKTEK 120 KERNPTGSET TPAQKFDVIK PQPRSFCNNN SLSHVNGLPE VDIDDGITCN KADEKYEHVE 180 NLMDAKSMWW ENLLVEIGGV NAVDPAAMDT DEAGTSLMNS SSSVFDIEQL WSLFNEETGQ 240 LD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 8 | 113 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461613.1 | 1e-148 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9ZTC3 | 3e-91 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | E5D8F5 | 1e-106 | E5D8F5_BRAOB; MYB2 | ||||
STRING | Bo6g100940.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-93 | myb domain protein 90 |