PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC992_p7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 258aa MW: 28673.2 Da PI: 7.527 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173.4 | 2.4e-54 | 84 | 180 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+++lP +akis+d+ket+qecvse+isfvt+ea+++cqre+rkti+++d+lwa+++lGf+dyvepl++yl++yreleg++ RrC992_p7 84 VREQDRFMPIANVIRIMRRILPVHAKISDDSKETIQECVSEYISFVTGEANERCQREQRKTITAEDVLWAMSKLGFDDYVEPLTLYLHRYRELEGDR 180 69*********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-49 | 80 | 182 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.2E-37 | 87 | 181 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-24 | 90 | 154 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 8.2E-17 | 118 | 136 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 121 | 137 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 8.2E-17 | 137 | 155 | No hit | No description |
PRINTS | PR00615 | 8.2E-17 | 156 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGDEKGSSVA SKTRCGGCEG YASIFRAFSF LYMHRPKIVT LKKDMERGVS HGYGKFSLNN 60 TNASEPELNQ ANKTANGCEE ECTVREQDRF MPIANVIRIM RRILPVHAKI SDDSKETIQE 120 CVSEYISFVT GEANERCQRE QRKTITAEDV LWAMSKLGFD DYVEPLTLYL HRYRELEGDR 180 GVNYSAGSVS MISGSGFKRP NGTTMTEYGA YGAVPGIHMA PYHYPHQNGF PNSKMGGSSS 240 ASSGASVEIF PTAQQHKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-63 | 83 | 175 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025628 | 1e-158 | AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7. | |||
GenBank | AY138461 | 1e-158 | AY138461.1 Arabidopsis thaliana leafy cotyledon 1-like L1L protein mRNA, complete cds. | |||
GenBank | CP002688 | 1e-158 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434458.1 | 1e-151 | PREDICTED: nuclear transcription factor Y subunit B-6-like | ||||
Swissprot | Q84W66 | 1e-117 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3P6ET51 | 1e-126 | A0A3P6ET51_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g077820.1 | 1e-126 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9896 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 1e-119 | nuclear factor Y, subunit B6 |