PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9905_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 290aa    MW: 33116.3 Da    PI: 7.0315
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9905_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.71.2e-45161281115
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd +k+ePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ +++l
  RrC9905_p1  16 LPPGFRFHPTDEELITQYLHKKVLDISFSA-KAIGEVDFNKSEPWELPWMAKMGEKEWYFFCVRDKKYPTGLRTNRATEAGYWKATGKDKEIYR-GKTL 112
                 79**************************99.88***************8888899***************************************.999* PP

         NAM 100 vglkktLvfykgrapk 115
                 vg+kk+Lvfy+grapk
  RrC9905_p1 113 VGMKKILVFYRGRAPK 128
                 **************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-4812128IPR003441NAC domain
PROSITE profilePS5100540.60816165IPR003441NAC domain
PfamPF023656.1E-2217125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
METFCGFQKE DEQMDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAIGE VDFNKSEPWE  60
LPWMAKMGEK EWYFFCVRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK TLVGMKKILV  120
FYRGRAPKVF QKTAGGKNIP ISSLIRIGSL GTGFNPSPLS HLTDDSSYND KTKTEPVYVP  180
CFSNQTDQLQ GNTFNCFSSP VFNSTQADIF HRLPLYHSSM LAQERSALQT MIDNNTRQSL  240
KAMSVSQETA VSTDMNDTSS DFEYGKRRLN AQEDPSFSTG LVDLEPFWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4061285129NO APICAL MERISTEM PROTEIN
1ut4_B1e-4061285129NO APICAL MERISTEM PROTEIN
1ut7_A1e-4061285129NO APICAL MERISTEM PROTEIN
1ut7_B1e-4061285129NO APICAL MERISTEM PROTEIN
3swm_A1e-4061288132NAC domain-containing protein 19
3swm_B1e-4061288132NAC domain-containing protein 19
3swm_C1e-4061288132NAC domain-containing protein 19
3swm_D1e-4061288132NAC domain-containing protein 19
3swp_A1e-4061288132NAC domain-containing protein 19
3swp_B1e-4061288132NAC domain-containing protein 19
3swp_C1e-4061288132NAC domain-containing protein 19
3swp_D1e-4061288132NAC domain-containing protein 19
4dul_A1e-4061285129NAC domain-containing protein 19
4dul_B1e-4061285129NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325420.0AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
GenBankKC9667450.0KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433507.10.0PREDICTED: NAC domain-containing protein 100-like
RefseqXP_018433512.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-179NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0A7BWT00.0A0A0A7BWT0_BRANA; NAC transcription factor 100
STRINGBra029313.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.10.0NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]