PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9905_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33116.3 Da PI: 7.0315 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.7 | 1.2e-45 | 16 | 128 | 1 | 115 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd +k+ePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ +++l RrC9905_p1 16 LPPGFRFHPTDEELITQYLHKKVLDISFSA-KAIGEVDFNKSEPWELPWMAKMGEKEWYFFCVRDKKYPTGLRTNRATEAGYWKATGKDKEIYR-GKTL 112 79**************************99.88***************8888899***************************************.999* PP NAM 100 vglkktLvfykgrapk 115 vg+kk+Lvfy+grapk RrC9905_p1 113 VGMKKILVFYRGRAPK 128 **************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-48 | 12 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.608 | 16 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-22 | 17 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
METFCGFQKE DEQMDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAIGE VDFNKSEPWE 60 LPWMAKMGEK EWYFFCVRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK TLVGMKKILV 120 FYRGRAPKVF QKTAGGKNIP ISSLIRIGSL GTGFNPSPLS HLTDDSSYND KTKTEPVYVP 180 CFSNQTDQLQ GNTFNCFSSP VFNSTQADIF HRLPLYHSSM LAQERSALQT MIDNNTRQSL 240 KAMSVSQETA VSTDMNDTSS DFEYGKRRLN AQEDPSFSTG LVDLEPFWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-40 | 6 | 128 | 5 | 129 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-40 | 6 | 128 | 5 | 129 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-40 | 6 | 128 | 5 | 129 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-40 | 6 | 128 | 5 | 129 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swm_B | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swm_C | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swm_D | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swp_A | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swp_B | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swp_C | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
3swp_D | 1e-40 | 6 | 128 | 8 | 132 | NAC domain-containing protein 19 |
4dul_A | 1e-40 | 6 | 128 | 5 | 129 | NAC domain-containing protein 19 |
4dul_B | 1e-40 | 6 | 128 | 5 | 129 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232542 | 0.0 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. | |||
GenBank | KC966745 | 0.0 | KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433507.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Refseq | XP_018433512.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-179 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0A7BWT0 | 0.0 | A0A0A7BWT0_BRANA; NAC transcription factor 100 | ||||
STRING | Bra029313.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 0.0 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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