PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9797_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 205aa    MW: 22643 Da    PI: 6.0264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9797_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2069118356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+W+AeIrdp   + +  r++lg+f+tae Aa a+++a+ +++g+
  RrC9797_p1  69 YRGVRQRP-WGKWAAEIRDP---N-KaSRVWLGTFDTAEAAALAYDKAAFEFRGH 118
                 9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2368126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3368126IPR001471AP2/ERF domain
SMARTSM003801.6E-3868131IPR001471AP2/ERF domain
CDDcd000186.80E-2568127No hitNo description
PROSITE profilePS5103224.92268125IPR001471AP2/ERF domain
PfamPF008471.1E-1468118IPR001471AP2/ERF domain
PRINTSPR003677.8E-126980IPR001471AP2/ERF domain
PRINTSPR003677.8E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MHSGKRPLSP ESMAGKTEEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSV NQSSSLTPQE  60
QSNARQRNYR GVRQRPWGKW AAEIRDPNKA SRVWLGTFDT AEAAALAYDK AAFEFRGHKA  120
KLNFPEHILT NSTRPYPSTD TSHDRITVMP PPAISPDILL DRYGQFDSAN IDSVANFSMN  180
MSSSSSSLNQ QEHIPKVEDG KSVKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2664128166ATERF1
3gcc_A9e-2664128166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467212.11e-136PREDICTED: ethylene-responsive transcription factor ERF112-like, partial
SwissprotP930071e-88EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A078GS281e-130A0A078GS28_BRANA; BnaCnng05370D protein
TrEMBLA0A0D3BSD61e-130A0A0D3BSD6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C0411e-130A0A3P6C041_BRAOL; Uncharacterized protein
STRINGBo4g043530.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-80ERF family protein