PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9723_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 310aa    MW: 34170.1 Da    PI: 4.5001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9723_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.8e-13108156254
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                 +  GVr +k +g+W+AeIr+p        +r +lg+f t e+A++a+ + r+++ 
  RrC9723_p1 108 KPVGVRLRK-WGKWAAEIRHP-----IlkTRRWLGTFLTQEDAHQAYKKKRREYD 156
                 678****99.**********8.....556999*******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.763108165IPR001471AP2/ERF domain
SMARTSM003806.0E-11108168IPR001471AP2/ERF domain
PfamPF008473.1E-6108156IPR001471AP2/ERF domain
CDDcd000181.14E-16110148No hitNo description
SuperFamilySSF541711.9E-12110155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-16111153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVAIRKRVMK KKPKSESNPQ ETQLFSKVRI IVSDPYATDD SSSDEEDEMN PRPRPVKRIV  60
REINFPPRDD EPSSLCSSGV TTKSTTSKRA SSSAAARLAA SRARLVNKPV GVRLRKWGKW  120
AAEIRHPILK TRRWLGTFLT QEDAHQAYKK KRREYDELLG IVVDPVSAVS VEDAKPDDGS  180
STTEEDTPDS ALKEEIKITT TNDGVDDLSK ELLLDFNFAD LQIPDLGFCN DGGPMGGGGG  240
NELGLDFDCF FTDDQLDDFG LLDDIGFEDS GPSALPDFDF ADVEIDLSGS SFLDHSSPLN  300
ITCPMKSFAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460198.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_018460199.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA273e-80EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A078JF861e-136A0A078JF86_BRANA; BnaAnng20260D protein
STRINGBo2g060040.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-51ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]