PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC970_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 669aa    MW: 73863.5 Da    PI: 7.2347
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC970_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094675041954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  RrC970_p2 467 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 504
                664559******************************88 PP
2BELL122.51.8e-39325396172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  RrC970_p2 325 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 396
                589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-78258394IPR006563POX domain
PfamPF075266.5E-50263393IPR006563POX domain
PROSITE profilePS5007112.568445508IPR001356Homeobox domain
SMARTSM003891.2E-9448512IPR001356Homeobox domain
CDDcd000865.91E-12448509No hitNo description
SuperFamilySSF466892.95E-17449515IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29451514IPR009057Homeodomain-like
PfamPF059203.3E-18465504IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MSQDYHHHHH QQHQGGIFSF SNGFDRLDST SSTTQQKQEH QSVKMDEESS VAGSGIPVYE  60
TAGILSDMFN FPGSSGAVGG GDPDHDQSFR SNRQFLGKQL DQNIPANSAA AMQLFLMNPP  120
PPQQPPSPSS TTTKRSHHNN SSTLHMLLPN PSHQQGYTST MSMHQIPHQH QEQLTWQSSS  180
SSDHLHHHHH YNSQTEIGTI HSGGQGLSLS LSSSLEAAAK AEEYRNIYYG SKTTLLADYP  240
QHHLRSSPAV AAASSSTAGA INILRSSRYT KAAQELLEEF CTVGRGFSKK NKLRNSSNPN  300
TSGGDGGSPS SAGAMKDQPP LSASDRIEHQ RRKVKLLTML EEVDRRYNHY CEQMQMVVNS  360
FDIVMGHGAA LPYTALAQKA MSRHFRCLKD AVAAQLRQIC ELLGDKDAAG ISSSGLTKGE  420
TPRLRLLEQS LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK  480
HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE REREALEESE QDQEPRNNNN  540
DKGTKSNNND SNLTPVRTTS QTSMTAAQSA TTAPDAGVAT GHRLRSSDIN AYENDPSSSY  600
TNVAAVSSYA GPTAFSAVAT CQKGIGGFDD TNMDGDNVIS FGTNPTGDVS LTLGLRHVSN  660
MPDQRFLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16454512563Homeobox protein Meis2
3k2a_B1e-16454512563Homeobox protein Meis2
4xrm_A2e-16454512563Homeobox protein Meis2
4xrm_B2e-16454512563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBankAY0504590.0AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447383.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A397YM210.0A0A397YM21_BRACM; Uncharacterized protein
STRINGBo3g153820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]